Hb_000696_350

Information

Type -
Description -
Location Contig696: 243771-245747
Sequence    

Annotation

kegg
ID tcc:TCM_003143
description ARM repeat superfamily protein isoform 2
nr
ID XP_007049898.1
description ARM repeat superfamily protein isoform 2 [Theobroma cacao]
swissprot
ID Q32KV6
description Nucleotide exchange factor SIL1 OS=Bos taurus GN=SIL1 PE=2 SV=1
trembl
ID A0A061DMX8
description ARM repeat superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_003143 PE=4 SV=1
Gene Ontology
ID GO:0005488
description hsp70 nucleotide exchange factor fes1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_54611: 243336-244900 , PASA_asmbl_54613: 244970-245318
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000696_350 0.0 - - ARM repeat superfamily protein isoform 2 [Theobroma cacao]
2 Hb_008511_050 0.1193869098 - - PREDICTED: cyclase-associated protein 1 [Jatropha curcas]
3 Hb_000679_150 0.1199367585 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 56 isoform X2 [Fragaria vesca subsp. vesca]
4 Hb_006455_110 0.1215177615 - - bromodomain-containing protein, putative [Ricinus communis]
5 Hb_012286_050 0.1257689745 - - PREDICTED: syntaxin-61 [Jatropha curcas]
6 Hb_006455_090 0.126971822 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
7 Hb_025814_010 0.1275300028 - - hypothetical protein PRUPE_ppa015585mg [Prunus persica]
8 Hb_000307_200 0.1278852149 - - PREDICTED: uncharacterized protein LOC105638529 [Jatropha curcas]
9 Hb_000424_240 0.1299182142 - - PREDICTED: 3beta-hydroxysteroid-dehydrogenase/decarboxylase isoform 2 [Jatropha curcas]
10 Hb_010565_010 0.1322107441 - - PREDICTED: N-acetylglucosaminyl-phosphatidylinositol de-N-acetylase-like isoform X2 [Populus euphratica]
11 Hb_033312_140 0.1345882998 - - RNA and export factor-binding family protein [Populus trichocarpa]
12 Hb_003711_040 0.134871893 - - PREDICTED: UBX domain-containing protein 4 [Jatropha curcas]
13 Hb_007192_080 0.1350346838 - - PREDICTED: probable serine/threonine-protein kinase WNK3 isoform X2 [Jatropha curcas]
14 Hb_005511_060 0.138309789 - - conserved hypothetical protein [Ricinus communis]
15 Hb_083043_010 0.1388389159 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
16 Hb_115477_010 0.1413556455 - - Protein dom-3, putative [Ricinus communis]
17 Hb_000295_100 0.141520803 - - -
18 Hb_003363_010 0.1432943169 - - conserved hypothetical protein [Ricinus communis]
19 Hb_168973_010 0.1454172226 - - -
20 Hb_002023_020 0.1482098942 - - PREDICTED: aladin isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000696_350 Hb_000696_350 Hb_008511_050 Hb_008511_050 Hb_000696_350--Hb_008511_050 Hb_000679_150 Hb_000679_150 Hb_000696_350--Hb_000679_150 Hb_006455_110 Hb_006455_110 Hb_000696_350--Hb_006455_110 Hb_012286_050 Hb_012286_050 Hb_000696_350--Hb_012286_050 Hb_006455_090 Hb_006455_090 Hb_000696_350--Hb_006455_090 Hb_025814_010 Hb_025814_010 Hb_000696_350--Hb_025814_010 Hb_003195_060 Hb_003195_060 Hb_008511_050--Hb_003195_060 Hb_007192_080 Hb_007192_080 Hb_008511_050--Hb_007192_080 Hb_006332_010 Hb_006332_010 Hb_008511_050--Hb_006332_010 Hb_002200_130 Hb_002200_130 Hb_008511_050--Hb_002200_130 Hb_050455_010 Hb_050455_010 Hb_008511_050--Hb_050455_010 Hb_023344_030 Hb_023344_030 Hb_008511_050--Hb_023344_030 Hb_005883_050 Hb_005883_050 Hb_000679_150--Hb_005883_050 Hb_007380_090 Hb_007380_090 Hb_000679_150--Hb_007380_090 Hb_003363_010 Hb_003363_010 Hb_000679_150--Hb_003363_010 Hb_006663_070 Hb_006663_070 Hb_000679_150--Hb_006663_070 Hb_001691_120 Hb_001691_120 Hb_000679_150--Hb_001691_120 Hb_144598_030 Hb_144598_030 Hb_000679_150--Hb_144598_030 Hb_005965_010 Hb_005965_010 Hb_006455_110--Hb_005965_010 Hb_006455_110--Hb_006455_090 Hb_006455_080 Hb_006455_080 Hb_006455_110--Hb_006455_080 Hb_000295_100 Hb_000295_100 Hb_006455_110--Hb_000295_100 Hb_012807_080 Hb_012807_080 Hb_006455_110--Hb_012807_080 Hb_006455_110--Hb_012286_050 Hb_000307_200 Hb_000307_200 Hb_012286_050--Hb_000307_200 Hb_002023_020 Hb_002023_020 Hb_012286_050--Hb_002023_020 Hb_012286_050--Hb_006455_090 Hb_000364_150 Hb_000364_150 Hb_012286_050--Hb_000364_150 Hb_020902_010 Hb_020902_010 Hb_012286_050--Hb_020902_010 Hb_039253_010 Hb_039253_010 Hb_012286_050--Hb_039253_010 Hb_006455_090--Hb_006455_080 Hb_003711_040 Hb_003711_040 Hb_006455_090--Hb_003711_040 Hb_006455_090--Hb_000307_200 Hb_006455_090--Hb_020902_010 Hb_025814_010--Hb_000307_200 Hb_000045_070 Hb_000045_070 Hb_025814_010--Hb_000045_070 Hb_150204_010 Hb_150204_010 Hb_025814_010--Hb_150204_010 Hb_025814_010--Hb_007192_080 Hb_025814_010--Hb_003195_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
26.7635 12.5212 6.38376 35.8983 44.8228 115.056
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.8452 22.5914 34.6002 13.9734 16.478

CAGE analysis