Hb_003507_040

Information

Type -
Description -
Location Contig3507: 70816-74192
Sequence    

Annotation

kegg
ID rcu:RCOM_1685970
description hypothetical protein
nr
ID XP_002509752.1
description hypothetical protein RCOM_1685970 [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9RC68
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1685970 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_36509: 70860-72728 , PASA_asmbl_36510: 71130-72584
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003507_040 0.0 - - hypothetical protein RCOM_1685970 [Ricinus communis]
2 Hb_013479_020 0.1317391334 - - PREDICTED: probable E3 ubiquitin-protein ligase RNF144A-B [Jatropha curcas]
3 Hb_003813_100 0.1354592119 - - PREDICTED: proteasome subunit beta type-3-A [Cucumis sativus]
4 Hb_027445_060 0.143777108 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
5 Hb_000155_080 0.1490598148 - - guanylate-binding family protein [Populus trichocarpa]
6 Hb_019654_070 0.1493661892 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
7 Hb_000172_610 0.1593059403 - - hypothetical protein POPTR_0017s02240g, partial [Populus trichocarpa]
8 Hb_002835_190 0.1663741345 - - TRANSPARENT TESTA 12 protein, putative [Ricinus communis]
9 Hb_004375_060 0.1697785733 - - PREDICTED: myelin transcription factor 1-like isoform X1 [Jatropha curcas]
10 Hb_178345_010 0.1700023555 - - hypothetical protein PHAVU_004G084200g [Phaseolus vulgaris]
11 Hb_000085_280 0.1703113923 - - PREDICTED: beta-(1,2)-xylosyltransferase [Jatropha curcas]
12 Hb_004852_020 0.1707986864 - - -
13 Hb_000155_070 0.1721852912 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
14 Hb_000856_100 0.1723910364 - - PREDICTED: protein NUCLEAR FUSION DEFECTIVE 4 [Jatropha curcas]
15 Hb_001095_060 0.1748174628 - - Uncharacterized protein TCM_012505 [Theobroma cacao]
16 Hb_000997_260 0.1748249053 - - PREDICTED: rRNA-processing protein EFG1 isoform X1 [Jatropha curcas]
17 Hb_000340_480 0.1752795603 - - -
18 Hb_000914_060 0.1764596091 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
19 Hb_002942_030 0.177014175 - - hypothetical protein EUGRSUZ_K000651 [Eucalyptus grandis]
20 Hb_000028_050 0.1772324865 - - aldose-1-epimerase, putative [Ricinus communis]

Gene co-expression network

sample Hb_003507_040 Hb_003507_040 Hb_013479_020 Hb_013479_020 Hb_003507_040--Hb_013479_020 Hb_003813_100 Hb_003813_100 Hb_003507_040--Hb_003813_100 Hb_027445_060 Hb_027445_060 Hb_003507_040--Hb_027445_060 Hb_000155_080 Hb_000155_080 Hb_003507_040--Hb_000155_080 Hb_019654_070 Hb_019654_070 Hb_003507_040--Hb_019654_070 Hb_000172_610 Hb_000172_610 Hb_003507_040--Hb_000172_610 Hb_001504_170 Hb_001504_170 Hb_013479_020--Hb_001504_170 Hb_002942_030 Hb_002942_030 Hb_013479_020--Hb_002942_030 Hb_013479_020--Hb_019654_070 Hb_000028_050 Hb_000028_050 Hb_013479_020--Hb_000028_050 Hb_000085_340 Hb_000085_340 Hb_013479_020--Hb_000085_340 Hb_003627_020 Hb_003627_020 Hb_013479_020--Hb_003627_020 Hb_000085_280 Hb_000085_280 Hb_003813_100--Hb_000085_280 Hb_013405_130 Hb_013405_130 Hb_003813_100--Hb_013405_130 Hb_002290_060 Hb_002290_060 Hb_003813_100--Hb_002290_060 Hb_077219_010 Hb_077219_010 Hb_003813_100--Hb_077219_010 Hb_035524_030 Hb_035524_030 Hb_003813_100--Hb_035524_030 Hb_121236_010 Hb_121236_010 Hb_027445_060--Hb_121236_010 Hb_115919_010 Hb_115919_010 Hb_027445_060--Hb_115919_010 Hb_068946_010 Hb_068946_010 Hb_027445_060--Hb_068946_010 Hb_001095_060 Hb_001095_060 Hb_027445_060--Hb_001095_060 Hb_027445_060--Hb_003813_100 Hb_005305_060 Hb_005305_060 Hb_027445_060--Hb_005305_060 Hb_000155_080--Hb_019654_070 Hb_000155_080--Hb_000172_610 Hb_098315_100 Hb_098315_100 Hb_000155_080--Hb_098315_100 Hb_002627_060 Hb_002627_060 Hb_000155_080--Hb_002627_060 Hb_000856_100 Hb_000856_100 Hb_000155_080--Hb_000856_100 Hb_009193_130 Hb_009193_130 Hb_000155_080--Hb_009193_130 Hb_019654_070--Hb_098315_100 Hb_003656_030 Hb_003656_030 Hb_019654_070--Hb_003656_030 Hb_019654_070--Hb_000085_340 Hb_005488_100 Hb_005488_100 Hb_019654_070--Hb_005488_100 Hb_007178_010 Hb_007178_010 Hb_019654_070--Hb_007178_010 Hb_000172_610--Hb_002627_060 Hb_004254_040 Hb_004254_040 Hb_000172_610--Hb_004254_040 Hb_000172_610--Hb_098315_100 Hb_126669_010 Hb_126669_010 Hb_000172_610--Hb_126669_010 Hb_000270_400 Hb_000270_400 Hb_000172_610--Hb_000270_400
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
74.2275 0.896343 0.832691 6.41942 64.4129 152.264
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
90.7481 31.9602 19.0112 2.50998 2.71701

CAGE analysis