Hb_121236_010

Information

Type -
Description -
Location Contig121236: 2700-4249
Sequence    

Annotation

kegg
ID pop:POPTR_0010s148601
description geranyl diphosphate synthase family protein
nr
ID BAF98299.1
description geranyl-diphosphate synthase [Hevea brasiliensis]
swissprot
ID Q5HZ00
description Solanesyl diphosphate synthase 3, chloroplastic/mitochondrial OS=Arabidopsis thaliana GN=SPS3 PE=1 SV=1
trembl
ID A9ZN17
description Geranyl-diphosphate synthase OS=Hevea brasiliensis GN=HbGPS PE=2 SV=1
Gene Ontology
ID GO:0004161
description solanesyl diphosphate synthase chloroplastic mitochondrial-like isoform x2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_121236_010 0.0 - - geranyl-diphosphate synthase [Hevea brasiliensis]
2 Hb_115919_010 0.0667305932 - - unknown [Lotus japonicus]
3 Hb_027445_060 0.1112983686 - - PREDICTED: pescadillo homolog isoform X1 [Jatropha curcas]
4 Hb_061581_010 0.1198677204 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
5 Hb_001095_060 0.1202899694 - - Uncharacterized protein TCM_012505 [Theobroma cacao]
6 Hb_005305_060 0.1644274648 - - hypothetical protein MIMGU_mgv1a015111mg [Erythranthe guttata]
7 Hb_135403_010 0.1661412298 - - HEV1.1 [Hevea brasiliensis]
8 Hb_124587_010 0.1724478987 - - PREDICTED: importin-5-like [Musa acuminata subsp. malaccensis]
9 Hb_068946_010 0.1725755672 - - hypothetical protein CICLE_v100122621mg, partial [Citrus clementina]
10 Hb_008725_200 0.1753638204 - - PREDICTED: uncharacterized protein LOC105642590 [Jatropha curcas]
11 Hb_000122_030 0.1796090835 - - PREDICTED: uncharacterized protein LOC104606081, partial [Nelumbo nucifera]
12 Hb_002687_050 0.1815061016 - - PREDICTED: uncharacterized protein LOC105782305 isoform X2 [Gossypium raimondii]
13 Hb_001488_110 0.1867239744 - - -
14 Hb_004117_180 0.191660314 - - -
15 Hb_001662_160 0.1972759369 - - hypothetical protein PRUPE_ppa021315mg [Prunus persica]
16 Hb_004502_050 0.1974017201 - - hypothetical protein POPTR_1488s00200g [Populus trichocarpa]
17 Hb_005935_010 0.1983519695 - - -
18 Hb_003813_100 0.1985078217 - - PREDICTED: proteasome subunit beta type-3-A [Cucumis sativus]
19 Hb_008277_030 0.2008924161 - - hypothetical protein CICLE_v10024419mg, partial [Citrus clementina]
20 Hb_103351_010 0.2010238066 - - hypothetical protein POPTR_0002s01570g [Populus trichocarpa]

Gene co-expression network

sample Hb_121236_010 Hb_121236_010 Hb_115919_010 Hb_115919_010 Hb_121236_010--Hb_115919_010 Hb_027445_060 Hb_027445_060 Hb_121236_010--Hb_027445_060 Hb_061581_010 Hb_061581_010 Hb_121236_010--Hb_061581_010 Hb_001095_060 Hb_001095_060 Hb_121236_010--Hb_001095_060 Hb_005305_060 Hb_005305_060 Hb_121236_010--Hb_005305_060 Hb_135403_010 Hb_135403_010 Hb_121236_010--Hb_135403_010 Hb_115919_010--Hb_027445_060 Hb_115919_010--Hb_001095_060 Hb_115919_010--Hb_061581_010 Hb_115919_010--Hb_005305_060 Hb_000122_030 Hb_000122_030 Hb_115919_010--Hb_000122_030 Hb_068946_010 Hb_068946_010 Hb_027445_060--Hb_068946_010 Hb_027445_060--Hb_001095_060 Hb_003813_100 Hb_003813_100 Hb_027445_060--Hb_003813_100 Hb_027445_060--Hb_005305_060 Hb_061581_010--Hb_135403_010 Hb_032531_060 Hb_032531_060 Hb_061581_010--Hb_032531_060 Hb_061581_010--Hb_001095_060 Hb_034579_010 Hb_034579_010 Hb_061581_010--Hb_034579_010 Hb_001095_060--Hb_068946_010 Hb_001488_110 Hb_001488_110 Hb_001095_060--Hb_001488_110 Hb_144898_010 Hb_144898_010 Hb_005305_060--Hb_144898_010 Hb_000329_770 Hb_000329_770 Hb_005305_060--Hb_000329_770 Hb_001722_020 Hb_001722_020 Hb_005305_060--Hb_001722_020 Hb_005965_010 Hb_005965_010 Hb_005305_060--Hb_005965_010 Hb_135403_010--Hb_001488_110 Hb_135403_010--Hb_001095_060 Hb_135403_010--Hb_000122_030 Hb_135403_010--Hb_115919_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
462.454 7.69614 6.26808 128.087 334.244 2293.33
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
598.96 580.565 337.843 60.3365 0.5665

CAGE analysis