Hb_034579_010

Information

Type -
Description -
Location Contig34579: 5405-5756
Sequence    

Annotation

kegg
ID rcu:RCOM_0437760
description (Di)nucleoside polyphosphate hydrolase, putative
nr
ID XP_012074331.1
description PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
swissprot
ID Q9CAF2
description Nudix hydrolase 26, chloroplastic OS=Arabidopsis thaliana GN=NUDT26 PE=1 SV=1
trembl
ID A0A067KJ14
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_08766 PE=3 SV=1
Gene Ontology
ID GO:0016787
description nudix hydrolase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_034579_010 0.0 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
2 Hb_032531_060 0.0779168568 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
3 Hb_005731_140 0.1431126302 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
4 Hb_124141_010 0.1630047827 - - plant origin recognition complex subunit, putative [Ricinus communis]
5 Hb_000002_030 0.164444902 - - -
6 Hb_005933_010 0.1707897168 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
7 Hb_168737_010 0.1766073702 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
8 Hb_000316_090 0.1863706845 - - -
9 Hb_000204_020 0.186500904 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
10 Hb_061581_010 0.1876930492 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
11 Hb_000248_030 0.1879996162 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
12 Hb_032531_050 0.2013753648 - - hypothetical protein CICLE_v10003980mg [Citrus clementina]
13 Hb_096490_010 0.202125514 - - hypothetical protein CICLE_v100210772mg, partial [Citrus clementina]
14 Hb_106005_010 0.2095516548 - - EG5651 [Manihot esculenta]
15 Hb_073559_010 0.2137758875 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
16 Hb_002960_050 0.2166145541 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
17 Hb_003029_100 0.2179994952 - - -
18 Hb_000248_010 0.2202642338 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
19 Hb_003581_010 0.2220465801 - - hypothetical protein VITISV_004687 [Vitis vinifera]
20 Hb_002365_010 0.224649182 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]

Gene co-expression network

sample Hb_034579_010 Hb_034579_010 Hb_032531_060 Hb_032531_060 Hb_034579_010--Hb_032531_060 Hb_005731_140 Hb_005731_140 Hb_034579_010--Hb_005731_140 Hb_124141_010 Hb_124141_010 Hb_034579_010--Hb_124141_010 Hb_000002_030 Hb_000002_030 Hb_034579_010--Hb_000002_030 Hb_005933_010 Hb_005933_010 Hb_034579_010--Hb_005933_010 Hb_168737_010 Hb_168737_010 Hb_034579_010--Hb_168737_010 Hb_032531_060--Hb_005731_140 Hb_061581_010 Hb_061581_010 Hb_032531_060--Hb_061581_010 Hb_032531_060--Hb_124141_010 Hb_000248_030 Hb_000248_030 Hb_032531_060--Hb_000248_030 Hb_032531_060--Hb_005933_010 Hb_002482_060 Hb_002482_060 Hb_005731_140--Hb_002482_060 Hb_106005_010 Hb_106005_010 Hb_005731_140--Hb_106005_010 Hb_005731_140--Hb_124141_010 Hb_000810_020 Hb_000810_020 Hb_005731_140--Hb_000810_020 Hb_003029_100 Hb_003029_100 Hb_124141_010--Hb_003029_100 Hb_166480_010 Hb_166480_010 Hb_124141_010--Hb_166480_010 Hb_124141_010--Hb_002482_060 Hb_032531_050 Hb_032531_050 Hb_000002_030--Hb_032531_050 Hb_000316_090 Hb_000316_090 Hb_000002_030--Hb_000316_090 Hb_002365_010 Hb_002365_010 Hb_000002_030--Hb_002365_010 Hb_101151_030 Hb_101151_030 Hb_000002_030--Hb_101151_030 Hb_001235_060 Hb_001235_060 Hb_000002_030--Hb_001235_060 Hb_122567_020 Hb_122567_020 Hb_005933_010--Hb_122567_020 Hb_005933_010--Hb_000248_030 Hb_005933_010--Hb_001235_060 Hb_000248_010 Hb_000248_010 Hb_005933_010--Hb_000248_010 Hb_001691_160 Hb_001691_160 Hb_005933_010--Hb_001691_160 Hb_059952_010 Hb_059952_010 Hb_005933_010--Hb_059952_010 Hb_003581_010 Hb_003581_010 Hb_168737_010--Hb_003581_010 Hb_073559_010 Hb_073559_010 Hb_168737_010--Hb_073559_010 Hb_032225_020 Hb_032225_020 Hb_168737_010--Hb_032225_020 Hb_168737_010--Hb_005731_140 Hb_000265_130 Hb_000265_130 Hb_168737_010--Hb_000265_130 Hb_000832_240 Hb_000832_240 Hb_168737_010--Hb_000832_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.96019 1.13211 1.25076 11.5657 5.3868 141.585
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
16.4798 24.2562 8.42202 2.18666 3.2268

CAGE analysis