Hb_001235_060

Information

Type -
Description -
Location Contig1235: 134402-139567
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_07150: 138668-140766 , PASA_asmbl_07151: 138607-140766 , PASA_asmbl_07152: 138714-140766
cDNA
(Sanger)
(ID:Location)		 031_I01.ab1: 138668-140114

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001235_060 0.0 - - -
2 Hb_005933_010 0.1350763753 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
3 Hb_000248_030 0.1377244435 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
4 Hb_000248_010 0.1428585129 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
5 Hb_122567_020 0.1509662296 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
6 Hb_000805_300 0.1622764565 - - -
7 Hb_000002_030 0.1745952877 - - -
8 Hb_003927_150 0.1780520276 - - -
9 Hb_101151_030 0.1816048336 - - -
10 Hb_001691_160 0.1822513777 - - conserved hypothetical protein [Ricinus communis]
11 Hb_059952_010 0.1822640288 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
12 Hb_073559_010 0.1896735607 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
13 Hb_079212_010 0.1897751355 - - conserved hypothetical protein [Ricinus communis]
14 Hb_088065_010 0.1935791409 - - hypothetical protein glysoja_007934 [Glycine soja]
15 Hb_088774_010 0.195435751 - - -
16 Hb_000617_170 0.1955732602 - - -
17 Hb_001385_080 0.1963463873 - - -
18 Hb_000523_100 0.1974317458 - - PREDICTED: protein DJ-1 homolog D-like [Populus euphratica]
19 Hb_002960_050 0.2043221899 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
20 Hb_000059_090 0.2060795453 - - -

Gene co-expression network

sample Hb_001235_060 Hb_001235_060 Hb_005933_010 Hb_005933_010 Hb_001235_060--Hb_005933_010 Hb_000248_030 Hb_000248_030 Hb_001235_060--Hb_000248_030 Hb_000248_010 Hb_000248_010 Hb_001235_060--Hb_000248_010 Hb_122567_020 Hb_122567_020 Hb_001235_060--Hb_122567_020 Hb_000805_300 Hb_000805_300 Hb_001235_060--Hb_000805_300 Hb_000002_030 Hb_000002_030 Hb_001235_060--Hb_000002_030 Hb_005933_010--Hb_122567_020 Hb_005933_010--Hb_000248_030 Hb_005933_010--Hb_000248_010 Hb_001691_160 Hb_001691_160 Hb_005933_010--Hb_001691_160 Hb_059952_010 Hb_059952_010 Hb_005933_010--Hb_059952_010 Hb_000248_030--Hb_000248_010 Hb_000248_030--Hb_122567_020 Hb_073559_010 Hb_073559_010 Hb_000248_030--Hb_073559_010 Hb_002960_050 Hb_002960_050 Hb_000248_030--Hb_002960_050 Hb_000248_010--Hb_002960_050 Hb_000248_010--Hb_073559_010 Hb_088065_010 Hb_088065_010 Hb_000248_010--Hb_088065_010 Hb_122567_020--Hb_000805_300 Hb_000617_170 Hb_000617_170 Hb_122567_020--Hb_000617_170 Hb_122567_020--Hb_059952_010 Hb_001385_080 Hb_001385_080 Hb_122567_020--Hb_001385_080 Hb_001454_110 Hb_001454_110 Hb_000805_300--Hb_001454_110 Hb_101151_030 Hb_101151_030 Hb_000805_300--Hb_101151_030 Hb_032531_040 Hb_032531_040 Hb_000805_300--Hb_032531_040 Hb_000805_300--Hb_005933_010 Hb_000805_300--Hb_059952_010 Hb_032531_050 Hb_032531_050 Hb_000002_030--Hb_032531_050 Hb_000316_090 Hb_000316_090 Hb_000002_030--Hb_000316_090 Hb_034579_010 Hb_034579_010 Hb_000002_030--Hb_034579_010 Hb_002365_010 Hb_002365_010 Hb_000002_030--Hb_002365_010 Hb_000002_030--Hb_101151_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.36976 0.644251 0 4.13735 2.16003 44.9127
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.07384 1.4224 0.557089 2.24109 0.610619

CAGE analysis