Hb_032531_040

Information

Type -
Description -
Location Contig32531: 48478-63726
Sequence    

Annotation

kegg
ID -
description -
nr
ID KHG25219.1
description E3 ISG15--protein ligase HERC5 [Gossypium arboreum]
swissprot
ID -
description -
trembl
ID A0A0B0PLB5
description E3 ISG15--protein ligase HERC5 OS=Gossypium arboreum GN=F383_31918 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34281: 37242-71735 , PASA_asmbl_34282: 37343-71630
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032531_040 0.0 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]
2 Hb_001454_110 0.0693422252 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
3 Hb_032531_050 0.1450428715 - - hypothetical protein CICLE_v10003980mg [Citrus clementina]
4 Hb_000805_300 0.1549191652 - - -
5 Hb_174005_010 0.1748062971 - - hypothetical protein EUGRSUZ_D00590 [Eucalyptus grandis]
6 Hb_000589_320 0.1851923981 - - unnamed protein product [Vitis vinifera]
7 Hb_001579_040 0.1946877346 - - -
8 Hb_059952_010 0.2013251611 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
9 Hb_000002_030 0.2024653166 - - -
10 Hb_101151_030 0.2066898123 - - -
11 Hb_000316_090 0.2085586777 - - -
12 Hb_187459_010 0.2089232008 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
13 Hb_017134_020 0.2212982129 - - -
14 Hb_145827_010 0.2306108415 - - hypothetical protein POPTR_0003s13630g [Populus trichocarpa]
15 Hb_106873_010 0.2380677011 - - -
16 Hb_000005_210 0.2382774326 - - -
17 Hb_000041_170 0.2382774326 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
18 Hb_000047_040 0.2382774326 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
19 Hb_000072_260 0.2382774326 - - hypothetical protein MTR_5g044090 [Medicago truncatula]
20 Hb_000081_170 0.2382774326 - - -

Gene co-expression network

sample Hb_032531_040 Hb_032531_040 Hb_001454_110 Hb_001454_110 Hb_032531_040--Hb_001454_110 Hb_032531_050 Hb_032531_050 Hb_032531_040--Hb_032531_050 Hb_000805_300 Hb_000805_300 Hb_032531_040--Hb_000805_300 Hb_174005_010 Hb_174005_010 Hb_032531_040--Hb_174005_010 Hb_000589_320 Hb_000589_320 Hb_032531_040--Hb_000589_320 Hb_001579_040 Hb_001579_040 Hb_032531_040--Hb_001579_040 Hb_001454_110--Hb_000805_300 Hb_001454_110--Hb_032531_050 Hb_059952_010 Hb_059952_010 Hb_001454_110--Hb_059952_010 Hb_001454_110--Hb_001579_040 Hb_101151_030 Hb_101151_030 Hb_001454_110--Hb_101151_030 Hb_000002_030 Hb_000002_030 Hb_032531_050--Hb_000002_030 Hb_000316_090 Hb_000316_090 Hb_032531_050--Hb_000316_090 Hb_032531_050--Hb_000805_300 Hb_034579_010 Hb_034579_010 Hb_032531_050--Hb_034579_010 Hb_122567_020 Hb_122567_020 Hb_000805_300--Hb_122567_020 Hb_000805_300--Hb_101151_030 Hb_005933_010 Hb_005933_010 Hb_000805_300--Hb_005933_010 Hb_000805_300--Hb_059952_010 Hb_053582_010 Hb_053582_010 Hb_174005_010--Hb_053582_010 Hb_000005_210 Hb_000005_210 Hb_174005_010--Hb_000005_210 Hb_000041_170 Hb_000041_170 Hb_174005_010--Hb_000041_170 Hb_000047_040 Hb_000047_040 Hb_174005_010--Hb_000047_040 Hb_000072_260 Hb_000072_260 Hb_174005_010--Hb_000072_260 Hb_000081_170 Hb_000081_170 Hb_174005_010--Hb_000081_170 Hb_106873_010 Hb_106873_010 Hb_000589_320--Hb_106873_010 Hb_000589_320--Hb_001454_110 Hb_005839_010 Hb_005839_010 Hb_000589_320--Hb_005839_010 Hb_042026_010 Hb_042026_010 Hb_000589_320--Hb_042026_010 Hb_000962_010 Hb_000962_010 Hb_000589_320--Hb_000962_010 Hb_000291_130 Hb_000291_130 Hb_001579_040--Hb_000291_130 Hb_001579_040--Hb_059952_010 Hb_001579_040--Hb_000316_090 Hb_145827_010 Hb_145827_010 Hb_001579_040--Hb_145827_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.4604 1.44685 0.427477 55.2392 5.35967 1048.79
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
23.1262 25.3114 13.0223 1.93106 0

CAGE analysis