Hb_101151_030

Information

Type -
Description -
Location Contig101151: 8737-8967
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_101151_030 0.0 - - -
2 Hb_000805_300 0.138260169 - - -
3 Hb_003623_020 0.1562425755 - - -
4 Hb_079978_010 0.1713519793 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
5 Hb_000002_030 0.1725628516 - - -
6 Hb_001454_110 0.1759617613 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
7 Hb_001235_060 0.1816048336 - - -
8 Hb_001385_080 0.1893623231 - - -
9 Hb_005933_010 0.1947329603 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
10 Hb_122567_020 0.2027229864 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
11 Hb_001691_160 0.204614877 - - conserved hypothetical protein [Ricinus communis]
12 Hb_032531_050 0.204713702 - - hypothetical protein CICLE_v10003980mg [Citrus clementina]
13 Hb_053582_010 0.2062471847 - - -
14 Hb_032531_040 0.2066898123 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]
15 Hb_001969_050 0.2067085961 - - PREDICTED: uncharacterized protein LOC105634920 isoform X1 [Jatropha curcas]
16 Hb_000248_030 0.2073276496 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
17 Hb_005839_010 0.2088128474 - - 30S ribosomal protein s13 [Camellia sinensis]
18 Hb_003927_150 0.2208966174 - - -
19 Hb_000951_050 0.2287573319 - - -
20 Hb_000115_270 0.229926412 transcription factor TF Family: MYB hypothetical protein POPTR_0010s13290g [Populus trichocarpa]

Gene co-expression network

sample Hb_101151_030 Hb_101151_030 Hb_000805_300 Hb_000805_300 Hb_101151_030--Hb_000805_300 Hb_003623_020 Hb_003623_020 Hb_101151_030--Hb_003623_020 Hb_079978_010 Hb_079978_010 Hb_101151_030--Hb_079978_010 Hb_000002_030 Hb_000002_030 Hb_101151_030--Hb_000002_030 Hb_001454_110 Hb_001454_110 Hb_101151_030--Hb_001454_110 Hb_001235_060 Hb_001235_060 Hb_101151_030--Hb_001235_060 Hb_000805_300--Hb_001454_110 Hb_122567_020 Hb_122567_020 Hb_000805_300--Hb_122567_020 Hb_032531_040 Hb_032531_040 Hb_000805_300--Hb_032531_040 Hb_005933_010 Hb_005933_010 Hb_000805_300--Hb_005933_010 Hb_059952_010 Hb_059952_010 Hb_000805_300--Hb_059952_010 Hb_003623_020--Hb_000805_300 Hb_003623_020--Hb_079978_010 Hb_010172_060 Hb_010172_060 Hb_003623_020--Hb_010172_060 Hb_144552_010 Hb_144552_010 Hb_003623_020--Hb_144552_010 Hb_001691_160 Hb_001691_160 Hb_003623_020--Hb_001691_160 Hb_005318_020 Hb_005318_020 Hb_079978_010--Hb_005318_020 Hb_007083_050 Hb_007083_050 Hb_079978_010--Hb_007083_050 Hb_079978_010--Hb_122567_020 Hb_079978_010--Hb_000805_300 Hb_007447_020 Hb_007447_020 Hb_079978_010--Hb_007447_020 Hb_032531_050 Hb_032531_050 Hb_000002_030--Hb_032531_050 Hb_000316_090 Hb_000316_090 Hb_000002_030--Hb_000316_090 Hb_034579_010 Hb_034579_010 Hb_000002_030--Hb_034579_010 Hb_002365_010 Hb_002365_010 Hb_000002_030--Hb_002365_010 Hb_000002_030--Hb_001235_060 Hb_001454_110--Hb_032531_040 Hb_001454_110--Hb_032531_050 Hb_001454_110--Hb_059952_010 Hb_001579_040 Hb_001579_040 Hb_001454_110--Hb_001579_040 Hb_001235_060--Hb_005933_010 Hb_000248_030 Hb_000248_030 Hb_001235_060--Hb_000248_030 Hb_000248_010 Hb_000248_010 Hb_001235_060--Hb_000248_010 Hb_001235_060--Hb_122567_020 Hb_001235_060--Hb_000805_300
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.772639 0 0 2.2367 1.18949 36.1314
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.817033 0.651845 0.783182 1.22684 1.6605

CAGE analysis