Hb_144552_010

Information

Type -
Description -
Location Contig144552: 2307-2651
Sequence    

Annotation

kegg
ID tcc:TCM_017011
description CC-NBS-LRR protein, putative
nr
ID XP_007031653.1
description CC-NBS-LRR protein, putative [Theobroma cacao]
swissprot
ID Q9LRR5
description Putative disease resistance protein At3g14460 OS=Arabidopsis thaliana GN=At3g14460 PE=3 SV=1
trembl
ID A0A061EJV2
description CC-NBS-LRR protein, putative OS=Theobroma cacao GN=TCM_017011 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_144552_010 0.0 - - CC-NBS-LRR protein, putative [Theobroma cacao]
2 Hb_010172_060 0.2040818754 - - PREDICTED: uncharacterized protein LOC105634266 [Jatropha curcas]
3 Hb_003623_020 0.2042374834 - - -
4 Hb_004947_070 0.2056765817 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
5 Hb_101151_030 0.2423502039 - - -
6 Hb_001969_050 0.2485686727 - - PREDICTED: uncharacterized protein LOC105634920 isoform X1 [Jatropha curcas]
7 Hb_001676_040 0.2554045053 - - PREDICTED: uncharacterized protein LOC105637261 isoform X2 [Jatropha curcas]
8 Hb_000906_050 0.2581558014 - - -
9 Hb_000962_010 0.2583571186 - - -
10 Hb_001762_070 0.2596339817 - - -
11 Hb_005839_010 0.2667938207 - - 30S ribosomal protein s13 [Camellia sinensis]
12 Hb_053582_010 0.2711905179 - - -
13 Hb_001125_020 0.2741312159 - - hypothetical protein B456_001G219500 [Gossypium raimondii]
14 Hb_001385_050 0.2747955616 - - catalytic, putative [Ricinus communis]
15 Hb_001519_230 0.275924765 - - PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
16 Hb_079978_010 0.2859912878 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
17 Hb_003927_150 0.2912673763 - - -
18 Hb_000805_300 0.2926815299 - - -
19 Hb_001385_080 0.296091192 - - -
20 Hb_001206_070 0.2991782947 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_144552_010 Hb_144552_010 Hb_010172_060 Hb_010172_060 Hb_144552_010--Hb_010172_060 Hb_003623_020 Hb_003623_020 Hb_144552_010--Hb_003623_020 Hb_004947_070 Hb_004947_070 Hb_144552_010--Hb_004947_070 Hb_101151_030 Hb_101151_030 Hb_144552_010--Hb_101151_030 Hb_001969_050 Hb_001969_050 Hb_144552_010--Hb_001969_050 Hb_001676_040 Hb_001676_040 Hb_144552_010--Hb_001676_040 Hb_046609_010 Hb_046609_010 Hb_010172_060--Hb_046609_010 Hb_000510_070 Hb_000510_070 Hb_010172_060--Hb_000510_070 Hb_129358_010 Hb_129358_010 Hb_010172_060--Hb_129358_010 Hb_010172_060--Hb_003623_020 Hb_007639_010 Hb_007639_010 Hb_010172_060--Hb_007639_010 Hb_003623_020--Hb_101151_030 Hb_000805_300 Hb_000805_300 Hb_003623_020--Hb_000805_300 Hb_079978_010 Hb_079978_010 Hb_003623_020--Hb_079978_010 Hb_001691_160 Hb_001691_160 Hb_003623_020--Hb_001691_160 Hb_000906_050 Hb_000906_050 Hb_004947_070--Hb_000906_050 Hb_004947_070--Hb_010172_060 Hb_006995_020 Hb_006995_020 Hb_004947_070--Hb_006995_020 Hb_004947_070--Hb_001969_050 Hb_173423_010 Hb_173423_010 Hb_004947_070--Hb_173423_010 Hb_101151_030--Hb_000805_300 Hb_101151_030--Hb_079978_010 Hb_000002_030 Hb_000002_030 Hb_101151_030--Hb_000002_030 Hb_001454_110 Hb_001454_110 Hb_101151_030--Hb_001454_110 Hb_001235_060 Hb_001235_060 Hb_101151_030--Hb_001235_060 Hb_001969_050--Hb_101151_030 Hb_053582_010 Hb_053582_010 Hb_001969_050--Hb_053582_010 Hb_000951_050 Hb_000951_050 Hb_001969_050--Hb_000951_050 Hb_001969_050--Hb_003623_020 Hb_015930_010 Hb_015930_010 Hb_001969_050--Hb_015930_010 Hb_037605_010 Hb_037605_010 Hb_001676_040--Hb_037605_010 Hb_000115_270 Hb_000115_270 Hb_001676_040--Hb_000115_270 Hb_001676_040--Hb_010172_060 Hb_009265_020 Hb_009265_020 Hb_001676_040--Hb_009265_020 Hb_001676_040--Hb_046609_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.753483 0.654496 0.288709 0.53061 0.106975 20.0432
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 1.13376 1.40652

CAGE analysis