Hb_000906_050

Information

Type -
Description -
Location Contig906: 102360-103568
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000906_050 0.0 - - -
2 Hb_001377_440 0.2138961859 - - -
3 Hb_053582_010 0.2262521492 - - -
4 Hb_033883_050 0.243612315 - - -
5 Hb_010172_060 0.2439395969 - - PREDICTED: uncharacterized protein LOC105634266 [Jatropha curcas]
6 Hb_004947_070 0.2494343869 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
7 Hb_144552_010 0.2581558014 - - CC-NBS-LRR protein, putative [Theobroma cacao]
8 Hb_174005_010 0.2596362085 - - hypothetical protein EUGRSUZ_D00590 [Eucalyptus grandis]
9 Hb_000696_320 0.2654263869 - - PREDICTED: uncharacterized protein LOC104884717 [Beta vulgaris subsp. vulgaris]
10 Hb_001125_020 0.2684132652 - - hypothetical protein B456_001G219500 [Gossypium raimondii]
11 Hb_173423_010 0.2751650148 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000833_080 0.2761836092 - - PREDICTED: uncharacterized protein LOC105789525 [Gossypium raimondii]
13 Hb_187459_010 0.2800310496 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
14 Hb_000510_070 0.2849657145 - - PREDICTED: zinc finger BED domain-containing protein RICESLEEPER 2-like [Beta vulgaris subsp. vulgaris]
15 Hb_005222_010 0.2856296345 - - hypothetical protein MTR_1g033950 [Medicago truncatula]
16 Hb_000005_210 0.2983580463 - - -
17 Hb_000041_170 0.2983580463 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
18 Hb_000047_040 0.2983580463 - - PREDICTED: uncharacterized protein LOC105775709 [Gossypium raimondii]
19 Hb_000072_260 0.2983580463 - - hypothetical protein MTR_5g044090 [Medicago truncatula]
20 Hb_000081_170 0.2983580463 - - -

Gene co-expression network

sample Hb_000906_050 Hb_000906_050 Hb_001377_440 Hb_001377_440 Hb_000906_050--Hb_001377_440 Hb_053582_010 Hb_053582_010 Hb_000906_050--Hb_053582_010 Hb_033883_050 Hb_033883_050 Hb_000906_050--Hb_033883_050 Hb_010172_060 Hb_010172_060 Hb_000906_050--Hb_010172_060 Hb_004947_070 Hb_004947_070 Hb_000906_050--Hb_004947_070 Hb_144552_010 Hb_144552_010 Hb_000906_050--Hb_144552_010 Hb_001377_440--Hb_053582_010 Hb_001723_050 Hb_001723_050 Hb_001377_440--Hb_001723_050 Hb_006995_020 Hb_006995_020 Hb_001377_440--Hb_006995_020 Hb_001377_440--Hb_033883_050 Hb_001014_200 Hb_001014_200 Hb_001377_440--Hb_001014_200 Hb_174005_010 Hb_174005_010 Hb_053582_010--Hb_174005_010 Hb_101151_030 Hb_101151_030 Hb_053582_010--Hb_101151_030 Hb_086287_020 Hb_086287_020 Hb_053582_010--Hb_086287_020 Hb_056531_040 Hb_056531_040 Hb_053582_010--Hb_056531_040 Hb_110486_010 Hb_110486_010 Hb_033883_050--Hb_110486_010 Hb_033883_050--Hb_001014_200 Hb_033883_050--Hb_174005_010 Hb_011537_120 Hb_011537_120 Hb_033883_050--Hb_011537_120 Hb_033883_050--Hb_053582_010 Hb_046609_010 Hb_046609_010 Hb_010172_060--Hb_046609_010 Hb_000510_070 Hb_000510_070 Hb_010172_060--Hb_000510_070 Hb_129358_010 Hb_129358_010 Hb_010172_060--Hb_129358_010 Hb_003623_020 Hb_003623_020 Hb_010172_060--Hb_003623_020 Hb_010172_060--Hb_144552_010 Hb_007639_010 Hb_007639_010 Hb_010172_060--Hb_007639_010 Hb_004947_070--Hb_144552_010 Hb_004947_070--Hb_010172_060 Hb_004947_070--Hb_006995_020 Hb_001969_050 Hb_001969_050 Hb_004947_070--Hb_001969_050 Hb_173423_010 Hb_173423_010 Hb_004947_070--Hb_173423_010 Hb_144552_010--Hb_003623_020 Hb_144552_010--Hb_101151_030 Hb_144552_010--Hb_001969_050 Hb_001676_040 Hb_001676_040 Hb_144552_010--Hb_001676_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 1.43102 0 0 0 24.4699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.53373 0 0 0.573251 1.36911

CAGE analysis