Hb_056531_040

Information

Type -
Description -
Location Contig56531: 7757-8002
Sequence    

Annotation

kegg
ID cmo:103494239
description uncharacterized LOC103494239
nr
ID XP_008453564.1
description PREDICTED: uncharacterized protein LOC103494239 [Cucumis melo]
swissprot
ID -
description -
trembl
ID A0A067L1J9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_03233 PE=4 SV=1
Gene Ontology
ID GO:0044237
description fiber protein fb15

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_056531_040 0.0 - - PREDICTED: uncharacterized protein LOC103494239 [Cucumis melo]
2 Hb_000059_090 0.1938239032 - - -
3 Hb_000115_270 0.2063012036 transcription factor TF Family: MYB hypothetical protein POPTR_0010s13290g [Populus trichocarpa]
4 Hb_086287_020 0.2143396233 - - PREDICTED: pentatricopeptide repeat-containing protein At2g03880, mitochondrial [Jatropha curcas]
5 Hb_000002_030 0.2260774407 - - -
6 Hb_124567_010 0.23538769 - - -
7 Hb_053582_010 0.236165056 - - -
8 Hb_002365_010 0.239752229 - - hypothetical protein CISIN_1g0405342mg, partial [Citrus sinensis]
9 Hb_001235_060 0.2402192645 - - -
10 Hb_000248_010 0.2402830002 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
11 Hb_088774_010 0.2454843581 - - -
12 Hb_001691_160 0.2475491105 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002352_040 0.2557452293 - - PREDICTED: LOW QUALITY PROTEIN: F-box protein SKIP23-like [Jatropha curcas]
14 Hb_174005_010 0.2557912851 - - hypothetical protein EUGRSUZ_D00590 [Eucalyptus grandis]
15 Hb_005933_010 0.2563647667 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
16 Hb_009265_020 0.2602918525 - - UDP-glucosyltransferase, putative [Ricinus communis]
17 Hb_000248_030 0.2605641389 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
18 Hb_101151_030 0.2642887991 - - -
19 Hb_103351_010 0.2677898832 - - hypothetical protein POPTR_0002s01570g [Populus trichocarpa]
20 Hb_004282_030 0.2716398205 - - hypothetical protein EUGRSUZ_B01857 [Eucalyptus grandis]

Gene co-expression network

sample Hb_056531_040 Hb_056531_040 Hb_000059_090 Hb_000059_090 Hb_056531_040--Hb_000059_090 Hb_000115_270 Hb_000115_270 Hb_056531_040--Hb_000115_270 Hb_086287_020 Hb_086287_020 Hb_056531_040--Hb_086287_020 Hb_000002_030 Hb_000002_030 Hb_056531_040--Hb_000002_030 Hb_124567_010 Hb_124567_010 Hb_056531_040--Hb_124567_010 Hb_053582_010 Hb_053582_010 Hb_056531_040--Hb_053582_010 Hb_000295_090 Hb_000295_090 Hb_000059_090--Hb_000295_090 Hb_000707_070 Hb_000707_070 Hb_000059_090--Hb_000707_070 Hb_001235_060 Hb_001235_060 Hb_000059_090--Hb_001235_060 Hb_115578_010 Hb_115578_010 Hb_000059_090--Hb_115578_010 Hb_000059_090--Hb_086287_020 Hb_009265_020 Hb_009265_020 Hb_000115_270--Hb_009265_020 Hb_001691_160 Hb_001691_160 Hb_000115_270--Hb_001691_160 Hb_004282_030 Hb_004282_030 Hb_000115_270--Hb_004282_030 Hb_000115_270--Hb_000059_090 Hb_098842_010 Hb_098842_010 Hb_000115_270--Hb_098842_010 Hb_086287_020--Hb_098842_010 Hb_010997_050 Hb_010997_050 Hb_086287_020--Hb_010997_050 Hb_000004_140 Hb_000004_140 Hb_086287_020--Hb_000004_140 Hb_011537_120 Hb_011537_120 Hb_086287_020--Hb_011537_120 Hb_032531_050 Hb_032531_050 Hb_000002_030--Hb_032531_050 Hb_000316_090 Hb_000316_090 Hb_000002_030--Hb_000316_090 Hb_034579_010 Hb_034579_010 Hb_000002_030--Hb_034579_010 Hb_002365_010 Hb_002365_010 Hb_000002_030--Hb_002365_010 Hb_101151_030 Hb_101151_030 Hb_000002_030--Hb_101151_030 Hb_000002_030--Hb_001235_060 Hb_124567_010--Hb_004282_030 Hb_003636_050 Hb_003636_050 Hb_124567_010--Hb_003636_050 Hb_124567_010--Hb_010997_050 Hb_124567_010--Hb_001691_160 Hb_124567_010--Hb_086287_020 Hb_174005_010 Hb_174005_010 Hb_053582_010--Hb_174005_010 Hb_053582_010--Hb_101151_030 Hb_001377_440 Hb_001377_440 Hb_053582_010--Hb_001377_440 Hb_000906_050 Hb_000906_050 Hb_053582_010--Hb_000906_050 Hb_053582_010--Hb_086287_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1922 0 3.67597 0 6.17371 136.779
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
9.89601 2.68118 4.29195 4.30204 0

CAGE analysis