Hb_000707_070

Information

Type -
Description -
Location Contig707: 92936-93317
Sequence    

Annotation

kegg
ID pop:POPTR_0016s10230g
description POPTRDRAFT_835537; proton-dependent oligopeptide transport family protein
nr
ID XP_011006628.1
description PREDICTED: protein NRT1/ PTR FAMILY 5.6-like isoform X1 [Populus euphratica]
swissprot
ID P0CI03
description Protein NRT1/ PTR FAMILY 5.6 OS=Arabidopsis thaliana GN=NPF5.6 PE=2 SV=1
trembl
ID B9IFZ3
description Proton-dependent oligopeptide transport family protein OS=Populus trichocarpa GN=POPTR_0016s10230g PE=3 SV=1
Gene Ontology
ID GO:0016020
description proton-dependent oligopeptide transport family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000707_070 0.0 - - PREDICTED: protein NRT1/ PTR FAMILY 5.6-like isoform X1 [Populus euphratica]
2 Hb_000117_020 0.184498373 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
3 Hb_103351_010 0.187911958 - - hypothetical protein POPTR_0002s01570g [Populus trichocarpa]
4 Hb_124587_010 0.1905973616 - - PREDICTED: importin-5-like [Musa acuminata subsp. malaccensis]
5 Hb_126838_020 0.1911802432 - - JHL22C18.7 [Jatropha curcas]
6 Hb_000295_090 0.2009954745 - - Clathrin light chain 2 [Glycine soja]
7 Hb_000059_090 0.2045590336 - - -
8 Hb_000270_500 0.2069915629 - - PREDICTED: uncharacterized protein LOC105640439 [Jatropha curcas]
9 Hb_074961_010 0.2156044966 - - PREDICTED: leucine-rich repeat receptor-like protein kinase TDR [Jatropha curcas]
10 Hb_003360_020 0.2233134964 - - hypothetical protein POPTR_0016s07860g [Populus trichocarpa]
11 Hb_002249_110 0.2247649185 - - PREDICTED: centromere protein S isoform X1 [Jatropha curcas]
12 Hb_000117_010 0.2253584977 - - PREDICTED: ankyrin repeat-containing protein At3g12360-like [Malus domestica]
13 Hb_000033_060 0.2352358422 - - PREDICTED: uncharacterized protein LOC105111554 isoform X1 [Populus euphratica]
14 Hb_002253_110 0.2354181254 - - cysteine desulfurylase, putative [Ricinus communis]
15 Hb_003859_010 0.2383185078 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
16 Hb_088774_010 0.247496841 - - -
17 Hb_088065_010 0.2521942733 - - hypothetical protein glysoja_007934 [Glycine soja]
18 Hb_000466_060 0.2542475376 - - phosphofructokinase [Hevea brasiliensis]
19 Hb_181320_010 0.2543368176 - - PREDICTED: signal recognition particle 14 kDa protein [Jatropha curcas]
20 Hb_010290_020 0.2550398194 - - RAB6-interacting protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000707_070 Hb_000707_070 Hb_000117_020 Hb_000117_020 Hb_000707_070--Hb_000117_020 Hb_103351_010 Hb_103351_010 Hb_000707_070--Hb_103351_010 Hb_124587_010 Hb_124587_010 Hb_000707_070--Hb_124587_010 Hb_126838_020 Hb_126838_020 Hb_000707_070--Hb_126838_020 Hb_000295_090 Hb_000295_090 Hb_000707_070--Hb_000295_090 Hb_000059_090 Hb_000059_090 Hb_000707_070--Hb_000059_090 Hb_074961_010 Hb_074961_010 Hb_000117_020--Hb_074961_010 Hb_000117_020--Hb_103351_010 Hb_000117_010 Hb_000117_010 Hb_000117_020--Hb_000117_010 Hb_002253_110 Hb_002253_110 Hb_000117_020--Hb_002253_110 Hb_000117_020--Hb_124587_010 Hb_103351_010--Hb_124587_010 Hb_103351_010--Hb_002253_110 Hb_103351_010--Hb_074961_010 Hb_103351_010--Hb_000117_010 Hb_124587_010--Hb_074961_010 Hb_124587_010--Hb_000117_010 Hb_124587_010--Hb_002253_110 Hb_121236_010 Hb_121236_010 Hb_124587_010--Hb_121236_010 Hb_003859_010 Hb_003859_010 Hb_126838_020--Hb_003859_010 Hb_011525_020 Hb_011525_020 Hb_126838_020--Hb_011525_020 Hb_003360_020 Hb_003360_020 Hb_126838_020--Hb_003360_020 Hb_002796_030 Hb_002796_030 Hb_126838_020--Hb_002796_030 Hb_000213_060 Hb_000213_060 Hb_126838_020--Hb_000213_060 Hb_002249_110 Hb_002249_110 Hb_000295_090--Hb_002249_110 Hb_115578_010 Hb_115578_010 Hb_000295_090--Hb_115578_010 Hb_130134_020 Hb_130134_020 Hb_000295_090--Hb_130134_020 Hb_088774_010 Hb_088774_010 Hb_000295_090--Hb_088774_010 Hb_001385_090 Hb_001385_090 Hb_000295_090--Hb_001385_090 Hb_000523_100 Hb_000523_100 Hb_000295_090--Hb_000523_100 Hb_000059_090--Hb_000295_090 Hb_056531_040 Hb_056531_040 Hb_000059_090--Hb_056531_040 Hb_001235_060 Hb_001235_060 Hb_000059_090--Hb_001235_060 Hb_000059_090--Hb_115578_010 Hb_086287_020 Hb_086287_020 Hb_000059_090--Hb_086287_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
123.793 13.3144 2.14111 9.08596 30.0696 289.825
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
34.8072 6.48983 15.416 1.00502 0

CAGE analysis