Hb_000213_060

Information

Type -
Description -
Location Contig213: 143233-163040
Sequence    

Annotation

kegg
ID rcu:RCOM_1215700
description hypothetical protein
nr
ID XP_012086179.1
description PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
swissprot
ID Q5ZKD5
description RRP12-like protein OS=Gallus gallus GN=RRP12 PE=2 SV=1
trembl
ID B9SU36
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1215700 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22040: 143489-143775 , PASA_asmbl_22042: 147102-151426 , PASA_asmbl_22043: 152640-155114 , PASA_asmbl_22044: 155264-162418 , PASA_asmbl_22045: 162455-162880
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000213_060 0.0 - - PREDICTED: RRP12-like protein isoform X1 [Jatropha curcas]
2 Hb_010189_010 0.0857228978 - - -
3 Hb_113216_010 0.0943035415 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
4 Hb_000016_180 0.0971715941 - - PREDICTED: calcium-dependent protein kinase 26-like [Jatropha curcas]
5 Hb_000185_090 0.0975441993 desease resistance Gene Name: CDC48_N PREDICTED: cell division cycle protein 48 homolog [Jatropha curcas]
6 Hb_000466_060 0.1007423577 - - phosphofructokinase [Hevea brasiliensis]
7 Hb_002918_070 0.1015824893 - - hypothetical protein POPTR_0011s05530g [Populus trichocarpa]
8 Hb_000792_110 0.1018922802 - - PREDICTED: E3 ubiquitin-protein ligase Hakai [Jatropha curcas]
9 Hb_002837_070 0.1029554528 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 8-like isoform X1 [Jatropha curcas]
10 Hb_174865_050 0.1074545894 - - PREDICTED: neuroguidin [Jatropha curcas]
11 Hb_005016_150 0.1082502391 - - -
12 Hb_000211_090 0.1095395186 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
13 Hb_006901_040 0.1111558867 - - conserved hypothetical protein [Ricinus communis]
14 Hb_000212_280 0.1147212448 - - PREDICTED: putative RNA-binding protein Luc7-like 2 [Gossypium raimondii]
15 Hb_005000_270 0.119360507 - - unnamed protein product [Vitis vinifera]
16 Hb_000779_040 0.1202124194 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
17 Hb_001523_010 0.121359502 desease resistance Gene Name: NB-ARC hypothetical protein JCGZ_25496 [Jatropha curcas]
18 Hb_003673_020 0.1241882286 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
19 Hb_003226_170 0.1253259918 - - PREDICTED: poly [ADP-ribose] polymerase 2 isoform X1 [Jatropha curcas]
20 Hb_019871_020 0.126131812 - - PREDICTED: uncharacterized protein LOC105642047 [Jatropha curcas]

Gene co-expression network

sample Hb_000213_060 Hb_000213_060 Hb_010189_010 Hb_010189_010 Hb_000213_060--Hb_010189_010 Hb_113216_010 Hb_113216_010 Hb_000213_060--Hb_113216_010 Hb_000016_180 Hb_000016_180 Hb_000213_060--Hb_000016_180 Hb_000185_090 Hb_000185_090 Hb_000213_060--Hb_000185_090 Hb_000466_060 Hb_000466_060 Hb_000213_060--Hb_000466_060 Hb_002918_070 Hb_002918_070 Hb_000213_060--Hb_002918_070 Hb_000211_090 Hb_000211_090 Hb_010189_010--Hb_000211_090 Hb_000792_110 Hb_000792_110 Hb_010189_010--Hb_000792_110 Hb_002837_070 Hb_002837_070 Hb_010189_010--Hb_002837_070 Hb_005000_270 Hb_005000_270 Hb_010189_010--Hb_005000_270 Hb_010189_010--Hb_002918_070 Hb_000212_280 Hb_000212_280 Hb_113216_010--Hb_000212_280 Hb_113216_010--Hb_000016_180 Hb_113216_010--Hb_002837_070 Hb_113216_010--Hb_000185_090 Hb_025048_040 Hb_025048_040 Hb_113216_010--Hb_025048_040 Hb_174865_050 Hb_174865_050 Hb_113216_010--Hb_174865_050 Hb_000016_180--Hb_000185_090 Hb_000779_040 Hb_000779_040 Hb_000016_180--Hb_000779_040 Hb_000016_180--Hb_002918_070 Hb_000016_180--Hb_000792_110 Hb_000185_090--Hb_000211_090 Hb_003666_050 Hb_003666_050 Hb_000185_090--Hb_003666_050 Hb_000185_090--Hb_000779_040 Hb_019871_020 Hb_019871_020 Hb_000185_090--Hb_019871_020 Hb_001523_010 Hb_001523_010 Hb_000466_060--Hb_001523_010 Hb_000172_530 Hb_000172_530 Hb_000466_060--Hb_000172_530 Hb_000466_060--Hb_113216_010 Hb_000466_060--Hb_002837_070 Hb_000466_060--Hb_000016_180 Hb_002918_070--Hb_005000_270 Hb_002918_070--Hb_000211_090 Hb_002918_070--Hb_000212_280 Hb_001486_120 Hb_001486_120 Hb_002918_070--Hb_001486_120 Hb_002918_070--Hb_000779_040 Hb_000134_360 Hb_000134_360 Hb_002918_070--Hb_000134_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.7186 9.2101 2.14916 2.3816 39.6663 67.5954
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.0358 6.69248 5.10864 5.92613 2.64909

CAGE analysis