Hb_000115_270

Information

Type transcription factor
Description TF Family: MYB
Location Contig115: 284662-285995
Sequence    

Annotation

kegg
ID pop:POPTR_0010s13290g
description POPTRDRAFT_566603; hypothetical protein
nr
ID XP_002315935.1
description hypothetical protein POPTR_0010s13290g [Populus trichocarpa]
swissprot
ID Q9LDE1
description Transcription factor MYB108 OS=Arabidopsis thaliana GN=MYB108 PE=1 SV=1
trembl
ID B9HWG3
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s13290g PE=4 SV=1
Gene Ontology
ID GO:0003677
description transcription factor myb108-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000115_270 0.0 transcription factor TF Family: MYB hypothetical protein POPTR_0010s13290g [Populus trichocarpa]
2 Hb_009265_020 0.1685294006 - - UDP-glucosyltransferase, putative [Ricinus communis]
3 Hb_001691_160 0.1956178947 - - conserved hypothetical protein [Ricinus communis]
4 Hb_004282_030 0.2015028292 - - hypothetical protein EUGRSUZ_B01857 [Eucalyptus grandis]
5 Hb_056531_040 0.2063012036 - - PREDICTED: uncharacterized protein LOC103494239 [Cucumis melo]
6 Hb_000059_090 0.2172805691 - - -
7 Hb_098842_010 0.2187991298 - - PREDICTED: uncharacterized protein At4g02000-like [Eucalyptus grandis]
8 Hb_000962_010 0.226916415 - - -
9 Hb_101151_030 0.229926412 - - -
10 Hb_017134_020 0.2351618156 - - -
11 Hb_124567_010 0.2391700131 - - -
12 Hb_010997_050 0.2402926576 transcription factor TF Family: mTERF unnamed protein product [Coffea canephora]
13 Hb_022593_060 0.2413726861 - - -
14 Hb_010024_010 0.2422069646 - - Ran GTPase binding protein, putative [Ricinus communis]
15 Hb_001206_070 0.2423887313 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
16 Hb_000002_030 0.2449706984 - - -
17 Hb_000004_140 0.2459823045 - - -
18 Hb_003623_020 0.247242413 - - -
19 Hb_000795_010 0.2509875785 - - -
20 Hb_001454_110 0.2526074787 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]

Gene co-expression network

sample Hb_000115_270 Hb_000115_270 Hb_009265_020 Hb_009265_020 Hb_000115_270--Hb_009265_020 Hb_001691_160 Hb_001691_160 Hb_000115_270--Hb_001691_160 Hb_004282_030 Hb_004282_030 Hb_000115_270--Hb_004282_030 Hb_056531_040 Hb_056531_040 Hb_000115_270--Hb_056531_040 Hb_000059_090 Hb_000059_090 Hb_000115_270--Hb_000059_090 Hb_098842_010 Hb_098842_010 Hb_000115_270--Hb_098842_010 Hb_009265_020--Hb_098842_010 Hb_002490_040 Hb_002490_040 Hb_009265_020--Hb_002490_040 Hb_176022_010 Hb_176022_010 Hb_009265_020--Hb_176022_010 Hb_009265_020--Hb_056531_040 Hb_009265_020--Hb_000059_090 Hb_005933_010 Hb_005933_010 Hb_001691_160--Hb_005933_010 Hb_000002_030 Hb_000002_030 Hb_001691_160--Hb_000002_030 Hb_001235_060 Hb_001235_060 Hb_001691_160--Hb_001235_060 Hb_001385_080 Hb_001385_080 Hb_001691_160--Hb_001385_080 Hb_101151_030 Hb_101151_030 Hb_001691_160--Hb_101151_030 Hb_010997_050 Hb_010997_050 Hb_004282_030--Hb_010997_050 Hb_004282_030--Hb_098842_010 Hb_000004_140 Hb_000004_140 Hb_004282_030--Hb_000004_140 Hb_004829_020 Hb_004829_020 Hb_004282_030--Hb_004829_020 Hb_012340_040 Hb_012340_040 Hb_004282_030--Hb_012340_040 Hb_124567_010 Hb_124567_010 Hb_004282_030--Hb_124567_010 Hb_056531_040--Hb_000059_090 Hb_086287_020 Hb_086287_020 Hb_056531_040--Hb_086287_020 Hb_056531_040--Hb_000002_030 Hb_056531_040--Hb_124567_010 Hb_053582_010 Hb_053582_010 Hb_056531_040--Hb_053582_010 Hb_000295_090 Hb_000295_090 Hb_000059_090--Hb_000295_090 Hb_000707_070 Hb_000707_070 Hb_000059_090--Hb_000707_070 Hb_000059_090--Hb_001235_060 Hb_115578_010 Hb_115578_010 Hb_000059_090--Hb_115578_010 Hb_000059_090--Hb_086287_020 Hb_098842_010--Hb_010997_050 Hb_105484_010 Hb_105484_010 Hb_098842_010--Hb_105484_010 Hb_098842_010--Hb_000004_140 Hb_076583_010 Hb_076583_010 Hb_098842_010--Hb_076583_010 Hb_064951_010 Hb_064951_010 Hb_098842_010--Hb_064951_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.276535 0 0 0.029369 0.169863 3.64189
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0.0686863 0.127359 0.0964166 0

CAGE analysis