Hb_001969_050

Information

Type -
Description -
Location Contig1969: 79089-90471
Sequence    

Annotation

kegg
ID rcu:RCOM_0897260
description hypothetical protein
nr
ID XP_012073266.1
description PREDICTED: uncharacterized protein LOC105634920 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067KLZ1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_06208 PE=4 SV=1
Gene Ontology
ID GO:0005488
description bromo-adjacent domain-containing isoform 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001969_050 0.0 - - PREDICTED: uncharacterized protein LOC105634920 isoform X1 [Jatropha curcas]
2 Hb_101151_030 0.2067085961 - - -
3 Hb_053582_010 0.2406912975 - - -
4 Hb_144552_010 0.2485686727 - - CC-NBS-LRR protein, putative [Theobroma cacao]
5 Hb_000951_050 0.2732026258 - - -
6 Hb_003623_020 0.278579494 - - -
7 Hb_015930_010 0.2799256339 - - uncharacterized protein LOC100499930 [Glycine max]
8 Hb_001846_050 0.2806636364 - - -
9 Hb_001723_050 0.2807152881 - - galactinol synthase-2 [Manihot esculenta]
10 Hb_006995_020 0.2823573984 - - hypothetical protein glysoja_017339 [Glycine soja]
11 Hb_005241_020 0.2830057952 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
12 Hb_000805_300 0.2878474758 - - -
13 Hb_009486_010 0.2934899057 - - -
14 Hb_000002_030 0.2949554746 - - -
15 Hb_000115_270 0.2957573096 transcription factor TF Family: MYB hypothetical protein POPTR_0010s13290g [Populus trichocarpa]
16 Hb_001439_030 0.2991754761 - - -
17 Hb_005839_010 0.299280946 - - 30S ribosomal protein s13 [Camellia sinensis]
18 Hb_041813_070 0.2996229673 - - -
19 Hb_001235_060 0.3002665891 - - -
20 Hb_001385_080 0.301690435 - - -

Gene co-expression network

sample Hb_001969_050 Hb_001969_050 Hb_101151_030 Hb_101151_030 Hb_001969_050--Hb_101151_030 Hb_053582_010 Hb_053582_010 Hb_001969_050--Hb_053582_010 Hb_144552_010 Hb_144552_010 Hb_001969_050--Hb_144552_010 Hb_000951_050 Hb_000951_050 Hb_001969_050--Hb_000951_050 Hb_003623_020 Hb_003623_020 Hb_001969_050--Hb_003623_020 Hb_015930_010 Hb_015930_010 Hb_001969_050--Hb_015930_010 Hb_000805_300 Hb_000805_300 Hb_101151_030--Hb_000805_300 Hb_101151_030--Hb_003623_020 Hb_079978_010 Hb_079978_010 Hb_101151_030--Hb_079978_010 Hb_000002_030 Hb_000002_030 Hb_101151_030--Hb_000002_030 Hb_001454_110 Hb_001454_110 Hb_101151_030--Hb_001454_110 Hb_001235_060 Hb_001235_060 Hb_101151_030--Hb_001235_060 Hb_174005_010 Hb_174005_010 Hb_053582_010--Hb_174005_010 Hb_053582_010--Hb_101151_030 Hb_001377_440 Hb_001377_440 Hb_053582_010--Hb_001377_440 Hb_000906_050 Hb_000906_050 Hb_053582_010--Hb_000906_050 Hb_086287_020 Hb_086287_020 Hb_053582_010--Hb_086287_020 Hb_056531_040 Hb_056531_040 Hb_053582_010--Hb_056531_040 Hb_010172_060 Hb_010172_060 Hb_144552_010--Hb_010172_060 Hb_144552_010--Hb_003623_020 Hb_004947_070 Hb_004947_070 Hb_144552_010--Hb_004947_070 Hb_144552_010--Hb_101151_030 Hb_001676_040 Hb_001676_040 Hb_144552_010--Hb_001676_040 Hb_000248_030 Hb_000248_030 Hb_000951_050--Hb_000248_030 Hb_000951_050--Hb_101151_030 Hb_032531_050 Hb_032531_050 Hb_000951_050--Hb_032531_050 Hb_032531_060 Hb_032531_060 Hb_000951_050--Hb_032531_060 Hb_000951_050--Hb_000002_030 Hb_002960_050 Hb_002960_050 Hb_000951_050--Hb_002960_050 Hb_003623_020--Hb_000805_300 Hb_003623_020--Hb_079978_010 Hb_003623_020--Hb_010172_060 Hb_001691_160 Hb_001691_160 Hb_003623_020--Hb_001691_160 Hb_088774_010 Hb_088774_010 Hb_015930_010--Hb_088774_010 Hb_001722_020 Hb_001722_020 Hb_015930_010--Hb_001722_020 Hb_001846_050 Hb_001846_050 Hb_015930_010--Hb_001846_050 Hb_009486_010 Hb_009486_010 Hb_015930_010--Hb_009486_010 Hb_000295_100 Hb_000295_100 Hb_015930_010--Hb_000295_100 Hb_001675_060 Hb_001675_060 Hb_015930_010--Hb_001675_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0705843 0.022286 0.0205833 0.0304227 0.126075 2.39002
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0306642 0.0723736 0.0453525 0.0288824 0.404024

CAGE analysis