Hb_000805_300

Information

Type -
Description -
Location Contig805: 277979-279840
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_59002: 278502-280638
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000805_300 0.0 - - -
2 Hb_001454_110 0.130973277 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
3 Hb_122567_020 0.1324449682 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
4 Hb_101151_030 0.138260169 - - -
5 Hb_032531_040 0.1549191652 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]
6 Hb_005933_010 0.1607748989 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
7 Hb_059952_010 0.16095108 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
8 Hb_001235_060 0.1622764565 - - -
9 Hb_003623_020 0.1758974756 - - -
10 Hb_001385_080 0.1770458949 - - -
11 Hb_079978_010 0.1773622767 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
12 Hb_000002_030 0.178117422 - - -
13 Hb_032531_050 0.185645316 - - hypothetical protein CICLE_v10003980mg [Citrus clementina]
14 Hb_000248_030 0.1877483594 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
15 Hb_004958_040 0.1997534138 - - -
16 Hb_003927_150 0.2011842549 - - -
17 Hb_005839_010 0.2014564339 - - 30S ribosomal protein s13 [Camellia sinensis]
18 Hb_007083_050 0.2064713936 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 12-like isoform X2 [Nelumbo nucifera]
19 Hb_000316_090 0.2157965949 - - -
20 Hb_001579_040 0.2193897542 - - -

Gene co-expression network

sample Hb_000805_300 Hb_000805_300 Hb_001454_110 Hb_001454_110 Hb_000805_300--Hb_001454_110 Hb_122567_020 Hb_122567_020 Hb_000805_300--Hb_122567_020 Hb_101151_030 Hb_101151_030 Hb_000805_300--Hb_101151_030 Hb_032531_040 Hb_032531_040 Hb_000805_300--Hb_032531_040 Hb_005933_010 Hb_005933_010 Hb_000805_300--Hb_005933_010 Hb_059952_010 Hb_059952_010 Hb_000805_300--Hb_059952_010 Hb_001454_110--Hb_032531_040 Hb_032531_050 Hb_032531_050 Hb_001454_110--Hb_032531_050 Hb_001454_110--Hb_059952_010 Hb_001579_040 Hb_001579_040 Hb_001454_110--Hb_001579_040 Hb_001454_110--Hb_101151_030 Hb_122567_020--Hb_005933_010 Hb_000617_170 Hb_000617_170 Hb_122567_020--Hb_000617_170 Hb_122567_020--Hb_059952_010 Hb_001385_080 Hb_001385_080 Hb_122567_020--Hb_001385_080 Hb_001235_060 Hb_001235_060 Hb_122567_020--Hb_001235_060 Hb_003623_020 Hb_003623_020 Hb_101151_030--Hb_003623_020 Hb_079978_010 Hb_079978_010 Hb_101151_030--Hb_079978_010 Hb_000002_030 Hb_000002_030 Hb_101151_030--Hb_000002_030 Hb_101151_030--Hb_001235_060 Hb_032531_040--Hb_032531_050 Hb_174005_010 Hb_174005_010 Hb_032531_040--Hb_174005_010 Hb_000589_320 Hb_000589_320 Hb_032531_040--Hb_000589_320 Hb_032531_040--Hb_001579_040 Hb_000248_030 Hb_000248_030 Hb_005933_010--Hb_000248_030 Hb_005933_010--Hb_001235_060 Hb_000248_010 Hb_000248_010 Hb_005933_010--Hb_000248_010 Hb_001691_160 Hb_001691_160 Hb_005933_010--Hb_001691_160 Hb_005933_010--Hb_059952_010 Hb_004958_040 Hb_004958_040 Hb_059952_010--Hb_004958_040 Hb_059952_010--Hb_001385_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.293895 0.403415 0 5.17907 1.88137 55.3219
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.4065 1.14071 0.512442 1.24279 0.552985

CAGE analysis