Hb_001579_040

Information

Type -
Description -
Location Contig1579: 34853-35110
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13808: 31905-34924
cDNA
(Sanger)
(ID:Location)		 007_F09.ab1: 32105-34856 , 013_N24.ab1: 32030-34854 , 015_M05.ab1: 32082-34856 , 017_M15.ab1: 32166-34854 , 026_I12.ab1: 32160-34924 , 026_K10.ab1: 32239-34924

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001579_040 0.0 - - -
2 Hb_000291_130 0.163642343 - - -
3 Hb_001454_110 0.1756872189 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
4 Hb_059952_010 0.1869017628 - - PREDICTED: probable protein S-acyltransferase 7 [Eucalyptus grandis]
5 Hb_000316_090 0.1942184949 - - -
6 Hb_032531_040 0.1946877346 - - E3 ISG15--protein ligase HERC5 [Gossypium arboreum]
7 Hb_145827_010 0.1995323286 - - hypothetical protein POPTR_0003s13630g [Populus trichocarpa]
8 Hb_001385_080 0.2112010001 - - -
9 Hb_001907_090 0.214637693 - - -
10 Hb_002204_040 0.2149332638 - - hypothetical protein B456_008G181200 [Gossypium raimondii]
11 Hb_000684_480 0.2151212465 transcription factor TF Family: Orphans -
12 Hb_187459_010 0.2164521133 - - PREDICTED: uncharacterized protein LOC102619199, partial [Citrus sinensis]
13 Hb_000805_300 0.2193897542 - - -
14 Hb_106873_010 0.221125234 - - -
15 Hb_122567_020 0.2226635961 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
16 Hb_004958_040 0.2285337174 - - -
17 Hb_032531_050 0.2401417218 - - hypothetical protein CICLE_v10003980mg [Citrus clementina]
18 Hb_000671_040 0.2497239803 - - -
19 Hb_000204_020 0.250502805 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]
20 Hb_007188_050 0.251537322 - - -

Gene co-expression network

sample Hb_001579_040 Hb_001579_040 Hb_000291_130 Hb_000291_130 Hb_001579_040--Hb_000291_130 Hb_001454_110 Hb_001454_110 Hb_001579_040--Hb_001454_110 Hb_059952_010 Hb_059952_010 Hb_001579_040--Hb_059952_010 Hb_000316_090 Hb_000316_090 Hb_001579_040--Hb_000316_090 Hb_032531_040 Hb_032531_040 Hb_001579_040--Hb_032531_040 Hb_145827_010 Hb_145827_010 Hb_001579_040--Hb_145827_010 Hb_002450_130 Hb_002450_130 Hb_000291_130--Hb_002450_130 Hb_002204_040 Hb_002204_040 Hb_000291_130--Hb_002204_040 Hb_000671_040 Hb_000671_040 Hb_000291_130--Hb_000671_040 Hb_008096_020 Hb_008096_020 Hb_000291_130--Hb_008096_020 Hb_002972_060 Hb_002972_060 Hb_000291_130--Hb_002972_060 Hb_001454_110--Hb_032531_040 Hb_000805_300 Hb_000805_300 Hb_001454_110--Hb_000805_300 Hb_032531_050 Hb_032531_050 Hb_001454_110--Hb_032531_050 Hb_001454_110--Hb_059952_010 Hb_101151_030 Hb_101151_030 Hb_001454_110--Hb_101151_030 Hb_122567_020 Hb_122567_020 Hb_059952_010--Hb_122567_020 Hb_004958_040 Hb_004958_040 Hb_059952_010--Hb_004958_040 Hb_005933_010 Hb_005933_010 Hb_059952_010--Hb_005933_010 Hb_059952_010--Hb_000805_300 Hb_001385_080 Hb_001385_080 Hb_059952_010--Hb_001385_080 Hb_000002_030 Hb_000002_030 Hb_000316_090--Hb_000002_030 Hb_000316_090--Hb_032531_050 Hb_034579_010 Hb_034579_010 Hb_000316_090--Hb_034579_010 Hb_000316_090--Hb_145827_010 Hb_000684_480 Hb_000684_480 Hb_000316_090--Hb_000684_480 Hb_032531_040--Hb_032531_050 Hb_032531_040--Hb_000805_300 Hb_174005_010 Hb_174005_010 Hb_032531_040--Hb_174005_010 Hb_000589_320 Hb_000589_320 Hb_032531_040--Hb_000589_320 Hb_145827_010--Hb_059952_010 Hb_145827_010--Hb_000002_030 Hb_145827_010--Hb_001454_110 Hb_001981_080 Hb_001981_080 Hb_145827_010--Hb_001981_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.248553 0 0.255943 5.94183 0 32.6087
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.70358 1.79911 0 0 0

CAGE analysis