Hb_000671_040

Information

Type -
Description -
Location Contig671: 58472-65435
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000671_040 0.0 - - -
2 Hb_106873_010 0.1078759866 - - -
3 Hb_163132_010 0.1312293229 - - -
4 Hb_007356_010 0.1354096179 - - CTV.19 [Citrus trifoliata]
5 Hb_007290_020 0.1406808625 - - PREDICTED: subtilisin-like protease SBT4.14 [Jatropha curcas]
6 Hb_068804_060 0.14082733 - - PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
7 Hb_000300_140 0.1465621902 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
8 Hb_094132_010 0.1676697685 - - hypothetical protein POPTR_0018s03360g [Populus trichocarpa]
9 Hb_000291_130 0.1797111133 - - -
10 Hb_000193_030 0.192156218 - - PREDICTED: heavy metal-associated isoprenylated plant protein 26 [Jatropha curcas]
11 Hb_033312_110 0.1942374721 - - -
12 Hb_103093_010 0.201185596 - - PREDICTED: wall-associated receptor kinase 4-like [Elaeis guineensis]
13 Hb_002204_040 0.2135441001 - - hypothetical protein B456_008G181200 [Gossypium raimondii]
14 Hb_002450_130 0.218154783 - - hypothetical protein JCGZ_06565 [Jatropha curcas]
15 Hb_004907_030 0.2182222415 - - hypothetical protein POPTR_0012s032802g, partial [Populus trichocarpa]
16 Hb_081815_010 0.2219677542 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
17 Hb_000589_320 0.2343558317 - - unnamed protein product [Vitis vinifera]
18 Hb_082195_010 0.2385449425 - - Uncharacterized protein TCM_043808 [Theobroma cacao]
19 Hb_005723_070 0.2395181407 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
20 Hb_002972_060 0.2492038101 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000671_040 Hb_000671_040 Hb_106873_010 Hb_106873_010 Hb_000671_040--Hb_106873_010 Hb_163132_010 Hb_163132_010 Hb_000671_040--Hb_163132_010 Hb_007356_010 Hb_007356_010 Hb_000671_040--Hb_007356_010 Hb_007290_020 Hb_007290_020 Hb_000671_040--Hb_007290_020 Hb_068804_060 Hb_068804_060 Hb_000671_040--Hb_068804_060 Hb_000300_140 Hb_000300_140 Hb_000671_040--Hb_000300_140 Hb_000589_320 Hb_000589_320 Hb_106873_010--Hb_000589_320 Hb_002204_040 Hb_002204_040 Hb_106873_010--Hb_002204_040 Hb_000291_130 Hb_000291_130 Hb_106873_010--Hb_000291_130 Hb_001579_040 Hb_001579_040 Hb_106873_010--Hb_001579_040 Hb_094132_010 Hb_094132_010 Hb_106873_010--Hb_094132_010 Hb_163132_010--Hb_007356_010 Hb_163132_010--Hb_007290_020 Hb_163132_010--Hb_068804_060 Hb_163132_010--Hb_000300_140 Hb_033312_110 Hb_033312_110 Hb_163132_010--Hb_033312_110 Hb_004907_030 Hb_004907_030 Hb_163132_010--Hb_004907_030 Hb_007356_010--Hb_007290_020 Hb_007356_010--Hb_068804_060 Hb_007356_010--Hb_000300_140 Hb_007356_010--Hb_033312_110 Hb_007356_010--Hb_004907_030 Hb_007290_020--Hb_068804_060 Hb_007290_020--Hb_000300_140 Hb_007290_020--Hb_033312_110 Hb_007290_020--Hb_004907_030 Hb_068804_060--Hb_000300_140 Hb_068804_060--Hb_033312_110 Hb_068804_060--Hb_004907_030 Hb_000300_140--Hb_033312_110 Hb_000300_140--Hb_004907_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0.00929855 0 0.0252979
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0

CAGE analysis