Hb_002204_040

Information

Type -
Description -
Location Contig2204: 137721-138850
Sequence    

Annotation

kegg
ID tcc:TCM_018525
description Ribosomal protein L34e superfamily protein
nr
ID KJB50657.1
description hypothetical protein B456_008G181200 [Gossypium raimondii]
swissprot
ID Q42351
description 60S ribosomal protein L34-1 OS=Arabidopsis thaliana GN=RPL34A PE=2 SV=1
trembl
ID A0A0D2PWX6
description Gossypium raimondii chromosome 8, whole genome shotgun sequence OS=Gossypium raimondii GN=B456_008G181200 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_22700: 137553-138432
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002204_040 0.0 - - hypothetical protein B456_008G181200 [Gossypium raimondii]
2 Hb_000291_130 0.1475752726 - - -
3 Hb_005839_010 0.1926288361 - - 30S ribosomal protein s13 [Camellia sinensis]
4 Hb_079978_010 0.1935943516 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP71 isoform X1 [Nelumbo nucifera]
5 Hb_106873_010 0.20107034 - - -
6 Hb_001385_080 0.2021190929 - - -
7 Hb_122567_020 0.2131055142 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
8 Hb_000671_040 0.2135441001 - - -
9 Hb_001579_040 0.2149332638 - - -
10 Hb_002450_130 0.2185905438 - - hypothetical protein JCGZ_06565 [Jatropha curcas]
11 Hb_001454_110 0.2218083075 - - hypothetical protein POPTR_0026s00250g [Populus trichocarpa]
12 Hb_103093_010 0.2219041938 - - PREDICTED: wall-associated receptor kinase 4-like [Elaeis guineensis]
13 Hb_007188_050 0.2294222434 - - -
14 Hb_001907_090 0.236924957 - - -
15 Hb_001278_080 0.237993995 transcription factor TF Family: AUX/IAA hypothetical protein JCGZ_09311 [Jatropha curcas]
16 Hb_000805_300 0.2406576867 - - -
17 Hb_081815_010 0.2442148955 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
18 Hb_008096_020 0.2457613958 - - -
19 Hb_005318_020 0.2469824227 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
20 Hb_000589_320 0.247466871 - - unnamed protein product [Vitis vinifera]

Gene co-expression network

sample Hb_002204_040 Hb_002204_040 Hb_000291_130 Hb_000291_130 Hb_002204_040--Hb_000291_130 Hb_005839_010 Hb_005839_010 Hb_002204_040--Hb_005839_010 Hb_079978_010 Hb_079978_010 Hb_002204_040--Hb_079978_010 Hb_106873_010 Hb_106873_010 Hb_002204_040--Hb_106873_010 Hb_001385_080 Hb_001385_080 Hb_002204_040--Hb_001385_080 Hb_122567_020 Hb_122567_020 Hb_002204_040--Hb_122567_020 Hb_002450_130 Hb_002450_130 Hb_000291_130--Hb_002450_130 Hb_001579_040 Hb_001579_040 Hb_000291_130--Hb_001579_040 Hb_000671_040 Hb_000671_040 Hb_000291_130--Hb_000671_040 Hb_008096_020 Hb_008096_020 Hb_000291_130--Hb_008096_020 Hb_002972_060 Hb_002972_060 Hb_000291_130--Hb_002972_060 Hb_000589_320 Hb_000589_320 Hb_005839_010--Hb_000589_320 Hb_005839_010--Hb_001385_080 Hb_000805_300 Hb_000805_300 Hb_005839_010--Hb_000805_300 Hb_001454_110 Hb_001454_110 Hb_005839_010--Hb_001454_110 Hb_005839_010--Hb_122567_020 Hb_005318_020 Hb_005318_020 Hb_079978_010--Hb_005318_020 Hb_007083_050 Hb_007083_050 Hb_079978_010--Hb_007083_050 Hb_079978_010--Hb_122567_020 Hb_101151_030 Hb_101151_030 Hb_079978_010--Hb_101151_030 Hb_079978_010--Hb_000805_300 Hb_007447_020 Hb_007447_020 Hb_079978_010--Hb_007447_020 Hb_106873_010--Hb_000671_040 Hb_106873_010--Hb_000589_320 Hb_106873_010--Hb_000291_130 Hb_106873_010--Hb_001579_040 Hb_094132_010 Hb_094132_010 Hb_106873_010--Hb_094132_010 Hb_001385_080--Hb_122567_020 Hb_005933_010 Hb_005933_010 Hb_001385_080--Hb_005933_010 Hb_059952_010 Hb_059952_010 Hb_001385_080--Hb_059952_010 Hb_001385_080--Hb_000805_300 Hb_001385_080--Hb_001454_110 Hb_001385_080--Hb_101151_030 Hb_122567_020--Hb_005933_010 Hb_122567_020--Hb_000805_300 Hb_000617_170 Hb_000617_170 Hb_122567_020--Hb_000617_170 Hb_122567_020--Hb_059952_010 Hb_001235_060 Hb_001235_060 Hb_122567_020--Hb_001235_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.1638 0.606972 5.99569 31.2342 0.399296 132.585
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.856525 0.684093 0.813893 1.28737 0.861083

CAGE analysis