Hb_008096_020

Information

Type -
Description -
Location Contig8096: 9768-10470
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_008096_020 0.0 - - -
2 Hb_021943_070 0.134448206 - - -
3 Hb_002450_130 0.1365917048 - - hypothetical protein JCGZ_06565 [Jatropha curcas]
4 Hb_002972_060 0.1403231895 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
5 Hb_000084_130 0.1487396279 - - -
6 Hb_003656_150 0.1546278501 - - -
7 Hb_006995_010 0.1591373524 - - PREDICTED: 14 kDa zinc-binding protein [Jatropha curcas]
8 Hb_000683_090 0.1599920224 - - stress enhanced protein [Medicago truncatula]
9 Hb_005107_020 0.1777993367 - - hypothetical protein JCGZ_25266 [Jatropha curcas]
10 Hb_005318_020 0.1797191472 - - PREDICTED: lecithin-cholesterol acyltransferase-like 4 isoform X3 [Jatropha curcas]
11 Hb_000291_130 0.1808971421 - - -
12 Hb_031866_050 0.181311461 - - PREDICTED: uncharacterized protein LOC101756357 [Setaria italica]
13 Hb_003030_040 0.1844201703 - - hypothetical protein CISIN_1g0466212mg, partial [Citrus sinensis]
14 Hb_005318_010 0.1850313523 - - hypothetical protein POPTR_0012s15190g, partial [Populus trichocarpa]
15 Hb_007188_030 0.1864401369 - - PREDICTED: DNA topoisomerase 3-alpha-like [Malus domestica]
16 Hb_007447_020 0.1876245484 - - hypothetical protein CISIN_1g038065mg [Citrus sinensis]
17 Hb_103093_010 0.1906616716 - - PREDICTED: wall-associated receptor kinase 4-like [Elaeis guineensis]
18 Hb_000876_010 0.19479366 - - Uncharacterized protein TCM_022272 [Theobroma cacao]
19 Hb_001222_040 0.1989211696 - - -
20 Hb_005723_070 0.199102461 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]

Gene co-expression network

sample Hb_008096_020 Hb_008096_020 Hb_021943_070 Hb_021943_070 Hb_008096_020--Hb_021943_070 Hb_002450_130 Hb_002450_130 Hb_008096_020--Hb_002450_130 Hb_002972_060 Hb_002972_060 Hb_008096_020--Hb_002972_060 Hb_000084_130 Hb_000084_130 Hb_008096_020--Hb_000084_130 Hb_003656_150 Hb_003656_150 Hb_008096_020--Hb_003656_150 Hb_006995_010 Hb_006995_010 Hb_008096_020--Hb_006995_010 Hb_021943_070--Hb_002972_060 Hb_103093_010 Hb_103093_010 Hb_021943_070--Hb_103093_010 Hb_001089_080 Hb_001089_080 Hb_021943_070--Hb_001089_080 Hb_021943_070--Hb_000084_130 Hb_002732_020 Hb_002732_020 Hb_021943_070--Hb_002732_020 Hb_000291_130 Hb_000291_130 Hb_002450_130--Hb_000291_130 Hb_000876_010 Hb_000876_010 Hb_002450_130--Hb_000876_010 Hb_002450_130--Hb_002972_060 Hb_005723_070 Hb_005723_070 Hb_002450_130--Hb_005723_070 Hb_000130_170 Hb_000130_170 Hb_002450_130--Hb_000130_170 Hb_009119_010 Hb_009119_010 Hb_002972_060--Hb_009119_010 Hb_002972_060--Hb_005723_070 Hb_005318_010 Hb_005318_010 Hb_002972_060--Hb_005318_010 Hb_002972_060--Hb_000876_010 Hb_005318_020 Hb_005318_020 Hb_000084_130--Hb_005318_020 Hb_000084_130--Hb_003656_150 Hb_007083_050 Hb_007083_050 Hb_000084_130--Hb_007083_050 Hb_000084_130--Hb_006995_010 Hb_177103_010 Hb_177103_010 Hb_000084_130--Hb_177103_010 Hb_003656_150--Hb_006995_010 Hb_007188_030 Hb_007188_030 Hb_003656_150--Hb_007188_030 Hb_012675_080 Hb_012675_080 Hb_003656_150--Hb_012675_080 Hb_006198_090 Hb_006198_090 Hb_003656_150--Hb_006198_090 Hb_003029_100 Hb_003029_100 Hb_003656_150--Hb_003029_100 Hb_003030_040 Hb_003030_040 Hb_003656_150--Hb_003030_040 Hb_000289_080 Hb_000289_080 Hb_006995_010--Hb_000289_080 Hb_006995_010--Hb_003029_100 Hb_006995_010--Hb_012675_080 Hb_000086_190 Hb_000086_190 Hb_006995_010--Hb_000086_190 Hb_006995_010--Hb_006198_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.08875 0.330847 0.374228 37.403 1.83403 63.7216
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.43474 3.55942 1.97647 2.14942 1.7196

CAGE analysis