Hb_005318_010

Information

Type -
Description -
Location Contig5318: 39927-46199
Sequence    

Annotation

kegg
ID pop:POPTR_0012s15190g
description hypothetical protein
nr
ID XP_006377117.1
description hypothetical protein POPTR_0012s15190g, partial [Populus trichocarpa]
swissprot
ID -
description -
trembl
ID U5FXP5
description Uncharacterized protein (Fragment) OS=Populus trichocarpa GN=POPTR_0012s15190g PE=4 SV=1
Gene Ontology
ID GO:0005829
description lecithin-cholesterol acyltransferase-like 4

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_005318_010 0.0 - - hypothetical protein POPTR_0012s15190g, partial [Populus trichocarpa]
2 Hb_002972_060 0.1512322878 transcription factor TF Family: M-type mads box protein, putative [Ricinus communis]
3 Hb_005723_070 0.1820697031 - - hypothetical protein CISIN_1g011514mg [Citrus sinensis]
4 Hb_008096_020 0.1850313523 - - -
5 Hb_000130_170 0.2006825556 - - -
6 Hb_021943_070 0.2016725785 - - -
7 Hb_002450_130 0.2133806646 - - hypothetical protein JCGZ_06565 [Jatropha curcas]
8 Hb_009119_010 0.2142837906 - - -
9 Hb_103093_010 0.2148380629 - - PREDICTED: wall-associated receptor kinase 4-like [Elaeis guineensis]
10 Hb_006794_010 0.2149802226 - - elicitor-responsive protein [Hevea brasiliensis]
11 Hb_000953_120 0.222130234 - - -
12 Hb_081815_010 0.2252107635 - - PREDICTED: uncharacterized protein LOC100266863 [Vitis vinifera]
13 Hb_003025_060 0.2276585066 - - PREDICTED: protein TOO MANY MOUTHS [Jatropha curcas]
14 Hb_002079_020 0.2279218203 - - -
15 Hb_000876_010 0.2307277864 - - Uncharacterized protein TCM_022272 [Theobroma cacao]
16 Hb_000300_140 0.2355132697 transcription factor TF Family: HB Protein WUSCHEL, putative [Ricinus communis]
17 Hb_068804_060 0.2360349421 - - PREDICTED: ABC transporter G family member 17-like [Jatropha curcas]
18 Hb_007290_020 0.2360499963 - - PREDICTED: subtilisin-like protease SBT4.14 [Jatropha curcas]
19 Hb_033312_110 0.236373226 - - -
20 Hb_007356_010 0.2366488159 - - CTV.19 [Citrus trifoliata]

Gene co-expression network

sample Hb_005318_010 Hb_005318_010 Hb_002972_060 Hb_002972_060 Hb_005318_010--Hb_002972_060 Hb_005723_070 Hb_005723_070 Hb_005318_010--Hb_005723_070 Hb_008096_020 Hb_008096_020 Hb_005318_010--Hb_008096_020 Hb_000130_170 Hb_000130_170 Hb_005318_010--Hb_000130_170 Hb_021943_070 Hb_021943_070 Hb_005318_010--Hb_021943_070 Hb_002450_130 Hb_002450_130 Hb_005318_010--Hb_002450_130 Hb_009119_010 Hb_009119_010 Hb_002972_060--Hb_009119_010 Hb_002972_060--Hb_008096_020 Hb_002972_060--Hb_005723_070 Hb_002972_060--Hb_002450_130 Hb_000876_010 Hb_000876_010 Hb_002972_060--Hb_000876_010 Hb_005723_070--Hb_000130_170 Hb_005723_070--Hb_000876_010 Hb_005723_070--Hb_002450_130 Hb_033312_110 Hb_033312_110 Hb_005723_070--Hb_033312_110 Hb_000300_140 Hb_000300_140 Hb_005723_070--Hb_000300_140 Hb_008096_020--Hb_021943_070 Hb_008096_020--Hb_002450_130 Hb_000084_130 Hb_000084_130 Hb_008096_020--Hb_000084_130 Hb_003656_150 Hb_003656_150 Hb_008096_020--Hb_003656_150 Hb_006995_010 Hb_006995_010 Hb_008096_020--Hb_006995_010 Hb_103093_010 Hb_103093_010 Hb_000130_170--Hb_103093_010 Hb_000340_330 Hb_000340_330 Hb_000130_170--Hb_000340_330 Hb_000130_170--Hb_002450_130 Hb_000130_170--Hb_000876_010 Hb_021943_070--Hb_002972_060 Hb_021943_070--Hb_103093_010 Hb_001089_080 Hb_001089_080 Hb_021943_070--Hb_001089_080 Hb_021943_070--Hb_000084_130 Hb_002732_020 Hb_002732_020 Hb_021943_070--Hb_002732_020 Hb_000291_130 Hb_000291_130 Hb_002450_130--Hb_000291_130 Hb_002450_130--Hb_000876_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.441939 0 0 5.18753 0 6.19143
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.186704 0.146647 0 0.31221 0.260669

CAGE analysis