Hb_000248_010

Information

Type -
Description -
Location Contig248: 26825-32228
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa008056mg
description hypothetical protein
nr
ID XP_007202312.1
description hypothetical protein PRUPE_ppa008056mg [Prunus persica]
swissprot
ID Q2HJC9
description Polyglutamine-binding protein 1 OS=Bos taurus GN=PQBP1 PE=2 SV=1
trembl
ID M5VRA1
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa008056mg PE=4 SV=1
Gene Ontology
ID GO:0005622
description polyglutamine-binding protein 1 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_25826: 26421-69526
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000248_010 0.0 - - hypothetical protein PRUPE_ppa008056mg [Prunus persica]
2 Hb_002960_050 0.1152481656 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]
3 Hb_000248_030 0.1206355984 - - hypothetical protein Pmar_PMAR005331 [Perkinsus marinus ATCC 50983]
4 Hb_073559_010 0.1301616661 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
5 Hb_001235_060 0.1428585129 - - -
6 Hb_088065_010 0.1495189689 - - hypothetical protein glysoja_007934 [Glycine soja]
7 Hb_005933_010 0.1511802588 - - PREDICTED: putative disease resistance RPP13-like protein 1 [Populus euphratica]
8 Hb_000808_240 0.1539712765 - - -
9 Hb_000617_170 0.1738330666 - - -
10 Hb_001722_020 0.173933493 - - -
11 Hb_088774_010 0.1748237288 - - -
12 Hb_005965_010 0.1762404781 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
13 Hb_169170_010 0.1798140406 - - PREDICTED: protein disulfide-isomerase 5-1 isoform X2 [Nelumbo nucifera]
14 Hb_000976_030 0.187129811 - - PREDICTED: molybdenum cofactor sulfurase-like [Citrus sinensis]
15 Hb_003581_010 0.1883890906 - - hypothetical protein VITISV_004687 [Vitis vinifera]
16 Hb_122567_020 0.1996541549 - - hypothetical protein CICLE_v10009900mg [Citrus clementina]
17 Hb_000295_100 0.2040082804 - - -
18 Hb_001691_160 0.2050471781 - - conserved hypothetical protein [Ricinus communis]
19 Hb_032531_060 0.2057705174 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
20 Hb_002783_060 0.2087286419 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]

Gene co-expression network

sample Hb_000248_010 Hb_000248_010 Hb_002960_050 Hb_002960_050 Hb_000248_010--Hb_002960_050 Hb_000248_030 Hb_000248_030 Hb_000248_010--Hb_000248_030 Hb_073559_010 Hb_073559_010 Hb_000248_010--Hb_073559_010 Hb_001235_060 Hb_001235_060 Hb_000248_010--Hb_001235_060 Hb_088065_010 Hb_088065_010 Hb_000248_010--Hb_088065_010 Hb_005933_010 Hb_005933_010 Hb_000248_010--Hb_005933_010 Hb_000295_100 Hb_000295_100 Hb_002960_050--Hb_000295_100 Hb_002783_060 Hb_002783_060 Hb_002960_050--Hb_002783_060 Hb_005965_010 Hb_005965_010 Hb_002960_050--Hb_005965_010 Hb_002960_050--Hb_073559_010 Hb_106005_010 Hb_106005_010 Hb_002960_050--Hb_106005_010 Hb_000248_030--Hb_005933_010 Hb_000248_030--Hb_001235_060 Hb_122567_020 Hb_122567_020 Hb_000248_030--Hb_122567_020 Hb_000248_030--Hb_073559_010 Hb_000248_030--Hb_002960_050 Hb_073559_010--Hb_088065_010 Hb_168737_010 Hb_168737_010 Hb_073559_010--Hb_168737_010 Hb_073559_010--Hb_005965_010 Hb_001235_060--Hb_005933_010 Hb_001235_060--Hb_122567_020 Hb_000805_300 Hb_000805_300 Hb_001235_060--Hb_000805_300 Hb_000002_030 Hb_000002_030 Hb_001235_060--Hb_000002_030 Hb_000523_100 Hb_000523_100 Hb_088065_010--Hb_000523_100 Hb_088774_010 Hb_088774_010 Hb_088065_010--Hb_088774_010 Hb_088065_010--Hb_005965_010 Hb_032225_020 Hb_032225_020 Hb_088065_010--Hb_032225_020 Hb_005933_010--Hb_122567_020 Hb_001691_160 Hb_001691_160 Hb_005933_010--Hb_001691_160 Hb_059952_010 Hb_059952_010 Hb_005933_010--Hb_059952_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.5706 0.784481 0.522799 2.64089 2.43069 29.6699
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.45418 1.65802 1.69892 3.1529 0.266668

CAGE analysis