Hb_032225_020

Information

Type -
Description -
Location Contig32225: 24074-25030
Sequence    

Annotation

kegg
ID pop:POPTR_0006s08140g
description hypothetical protein
nr
ID XP_006381180.1
description hypothetical protein POPTR_0006s08140g [Populus trichocarpa]
swissprot
ID Q9LW60
description Putative protein phosphatase 2C-like protein 44 OS=Arabidopsis thaliana GN=At3g23360 PE=5 SV=1
trembl
ID U5GC34
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0006s08140g PE=4 SV=1
Gene Ontology
ID GO:0004722
description probable protein phosphatase 2c 44

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_34126: 9037-25306
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_032225_020 0.0 - - hypothetical protein POPTR_0006s08140g [Populus trichocarpa]
2 Hb_106005_010 0.1600906745 - - EG5651 [Manihot esculenta]
3 Hb_168737_010 0.1678352435 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_088065_010 0.1679318594 - - hypothetical protein glysoja_007934 [Glycine soja]
5 Hb_003581_010 0.1781779278 - - hypothetical protein VITISV_004687 [Vitis vinifera]
6 Hb_073559_010 0.1787188339 - - PREDICTED: probable beta-1,3-galactosyltransferase 12 [Jatropha curcas]
7 Hb_000265_130 0.1861181563 - - -
8 Hb_005731_140 0.1884666388 - - hypothetical protein JCGZ_26808 [Jatropha curcas]
9 Hb_013691_030 0.1927437882 - - hypothetical protein CISIN_1g020131mg [Citrus sinensis]
10 Hb_005965_010 0.194407887 transcription factor TF Family: MYB-related PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
11 Hb_000001_040 0.1948427824 - - unnamed protein product [Coffea canephora]
12 Hb_002671_080 0.2002048954 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-10-like isoform X1 [Jatropha curcas]
13 Hb_007765_010 0.2006978489 - - conserved hypothetical protein [Ricinus communis]
14 Hb_128998_010 0.2025721351 - - PREDICTED: uncharacterized protein LOC105650916 [Jatropha curcas]
15 Hb_007484_040 0.2051287387 - - -
16 Hb_010504_030 0.2064873608 - - calmodulin homolog {EST} [Brassica napus, Naehan, root, Peptide Partial, 53 aa]
17 Hb_007188_020 0.2067601375 - - hypothetical protein PRUPE_ppb010436mg [Prunus persica]
18 Hb_116632_010 0.2076164697 - - unnamed protein product [Vitis vinifera]
19 Hb_032531_060 0.2121985337 - - hypothetical protein PRUPE_ppa017035mg, partial [Prunus persica]
20 Hb_000204_020 0.2162053231 transcription factor TF Family: GNAT PREDICTED: uncharacterized N-acetyltransferase ycf52 [Jatropha curcas]

Gene co-expression network

sample Hb_032225_020 Hb_032225_020 Hb_106005_010 Hb_106005_010 Hb_032225_020--Hb_106005_010 Hb_168737_010 Hb_168737_010 Hb_032225_020--Hb_168737_010 Hb_088065_010 Hb_088065_010 Hb_032225_020--Hb_088065_010 Hb_003581_010 Hb_003581_010 Hb_032225_020--Hb_003581_010 Hb_073559_010 Hb_073559_010 Hb_032225_020--Hb_073559_010 Hb_000265_130 Hb_000265_130 Hb_032225_020--Hb_000265_130 Hb_000001_040 Hb_000001_040 Hb_106005_010--Hb_000001_040 Hb_005731_140 Hb_005731_140 Hb_106005_010--Hb_005731_140 Hb_005965_010 Hb_005965_010 Hb_106005_010--Hb_005965_010 Hb_002482_060 Hb_002482_060 Hb_106005_010--Hb_002482_060 Hb_007188_020 Hb_007188_020 Hb_106005_010--Hb_007188_020 Hb_136731_010 Hb_136731_010 Hb_106005_010--Hb_136731_010 Hb_168737_010--Hb_003581_010 Hb_168737_010--Hb_073559_010 Hb_168737_010--Hb_005731_140 Hb_168737_010--Hb_000265_130 Hb_000832_240 Hb_000832_240 Hb_168737_010--Hb_000832_240 Hb_000523_100 Hb_000523_100 Hb_088065_010--Hb_000523_100 Hb_088065_010--Hb_073559_010 Hb_000248_010 Hb_000248_010 Hb_088065_010--Hb_000248_010 Hb_088774_010 Hb_088774_010 Hb_088065_010--Hb_088774_010 Hb_088065_010--Hb_005965_010 Hb_003581_010--Hb_000001_040 Hb_003581_010--Hb_000265_130 Hb_128998_010 Hb_128998_010 Hb_003581_010--Hb_128998_010 Hb_000007_460 Hb_000007_460 Hb_003581_010--Hb_000007_460 Hb_116632_010 Hb_116632_010 Hb_003581_010--Hb_116632_010 Hb_073559_010--Hb_000248_010 Hb_002960_050 Hb_002960_050 Hb_073559_010--Hb_002960_050 Hb_000248_030 Hb_000248_030 Hb_073559_010--Hb_000248_030 Hb_073559_010--Hb_005965_010 Hb_000265_130--Hb_000001_040 Hb_000261_360 Hb_000261_360 Hb_000265_130--Hb_000261_360 Hb_010504_030 Hb_010504_030 Hb_000265_130--Hb_010504_030 Hb_000176_120 Hb_000176_120 Hb_000265_130--Hb_000176_120 Hb_000265_130--Hb_007188_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.00396 1.52786 1.64265 3.26835 0.659683 21.349
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.00906 3.41558 2.81415 0.803009 0

CAGE analysis