Hb_001846_050

Information

Type -
Description -
Location Contig1846: 106381-109211
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_18070: 106416-107069 , PASA_asmbl_18072: 106416-108992
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001846_050 0.0 - - -
2 Hb_168343_010 0.2094563476 - - sensory transduction histidine kinase, putative [Ricinus communis]
3 Hb_015930_010 0.2099890369 - - uncharacterized protein LOC100499930 [Glycine max]
4 Hb_000445_080 0.2120956768 transcription factor TF Family: MIKC PREDICTED: floral homeotic protein PMADS 2 [Jatropha curcas]
5 Hb_006455_080 0.2204010591 - - PREDICTED: transcription factor GTE6-like isoform X2 [Nelumbo nucifera]
6 Hb_094647_010 0.2204075039 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B-like [Jatropha curcas]
7 Hb_004738_050 0.2299378471 - - F-box/leucine rich repeat protein, putative [Ricinus communis]
8 Hb_103351_010 0.2352772104 - - hypothetical protein POPTR_0002s01570g [Populus trichocarpa]
9 Hb_007124_010 0.241409997 - - unnamed protein product [Coffea canephora]
10 Hb_022288_020 0.24272821 - - hypothetical protein POPTR_0006s08590g [Populus trichocarpa]
11 Hb_009486_010 0.2431932308 - - -
12 Hb_000117_020 0.2443132455 - - Receptor protein kinase CLAVATA1 precursor, putative [Ricinus communis]
13 Hb_088774_010 0.247939512 - - -
14 Hb_007827_020 0.2480873626 - - -
15 Hb_006455_090 0.2506528892 - - PREDICTED: transcription factor GTE1-like [Jatropha curcas]
16 Hb_007926_040 0.2537289034 - - sulfate transporter, putative [Ricinus communis]
17 Hb_024272_010 0.2564673917 - - PREDICTED: uncharacterized protein LOC104213140 [Nicotiana sylvestris]
18 Hb_005271_150 0.2609218458 - - PREDICTED: EKC/KEOPS complex subunit Tprkb-like [Malus domestica]
19 Hb_005656_060 0.2623368649 - - -
20 Hb_012286_050 0.2623599612 - - PREDICTED: syntaxin-61 [Jatropha curcas]

Gene co-expression network

sample Hb_001846_050 Hb_001846_050 Hb_168343_010 Hb_168343_010 Hb_001846_050--Hb_168343_010 Hb_015930_010 Hb_015930_010 Hb_001846_050--Hb_015930_010 Hb_000445_080 Hb_000445_080 Hb_001846_050--Hb_000445_080 Hb_006455_080 Hb_006455_080 Hb_001846_050--Hb_006455_080 Hb_094647_010 Hb_094647_010 Hb_001846_050--Hb_094647_010 Hb_004738_050 Hb_004738_050 Hb_001846_050--Hb_004738_050 Hb_012286_050 Hb_012286_050 Hb_168343_010--Hb_012286_050 Hb_168343_010--Hb_000445_080 Hb_006455_090 Hb_006455_090 Hb_168343_010--Hb_006455_090 Hb_168343_010--Hb_006455_080 Hb_000424_240 Hb_000424_240 Hb_168343_010--Hb_000424_240 Hb_000914_070 Hb_000914_070 Hb_168343_010--Hb_000914_070 Hb_088774_010 Hb_088774_010 Hb_015930_010--Hb_088774_010 Hb_001722_020 Hb_001722_020 Hb_015930_010--Hb_001722_020 Hb_009486_010 Hb_009486_010 Hb_015930_010--Hb_009486_010 Hb_000295_100 Hb_000295_100 Hb_015930_010--Hb_000295_100 Hb_001675_060 Hb_001675_060 Hb_015930_010--Hb_001675_060 Hb_000445_080--Hb_006455_080 Hb_000445_080--Hb_094647_010 Hb_000878_130 Hb_000878_130 Hb_000445_080--Hb_000878_130 Hb_006198_050 Hb_006198_050 Hb_000445_080--Hb_006198_050 Hb_006455_080--Hb_006455_090 Hb_006455_110 Hb_006455_110 Hb_006455_080--Hb_006455_110 Hb_000248_050 Hb_000248_050 Hb_006455_080--Hb_000248_050 Hb_003711_040 Hb_003711_040 Hb_006455_080--Hb_003711_040 Hb_006455_080--Hb_000295_100 Hb_000453_080 Hb_000453_080 Hb_006455_080--Hb_000453_080 Hb_000270_500 Hb_000270_500 Hb_094647_010--Hb_000270_500 Hb_094647_010--Hb_009486_010 Hb_001575_040 Hb_001575_040 Hb_094647_010--Hb_001575_040 Hb_000414_030 Hb_000414_030 Hb_094647_010--Hb_000414_030 Hb_094647_010--Hb_006455_080 Hb_094647_010--Hb_006455_110 Hb_007348_040 Hb_007348_040 Hb_004738_050--Hb_007348_040 Hb_004738_050--Hb_000445_080 Hb_004738_050--Hb_094647_010 Hb_007827_020 Hb_007827_020 Hb_004738_050--Hb_007827_020 Hb_007021_030 Hb_007021_030 Hb_004738_050--Hb_007021_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.76145 0.163865 0.44766 0.0693226 2.01824 11.462
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.03253 0.286573 2.00098 0.327793 1.54567

CAGE analysis