Hb_006198_050

Information

Type -
Description -
Location Contig6198: 31073-36218
Sequence    

Annotation

kegg
ID rcu:RCOM_1721280
description protein with unknown function
nr
ID XP_002521116.1
description protein with unknown function [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9S547
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1721280 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_51369: 31168-36116 , PASA_asmbl_51370: 33009-33192
cDNA
(Sanger)
(ID:Location)		 002_M07.ab1: 31168-35787

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_006198_050 0.0 - - protein with unknown function [Ricinus communis]
2 Hb_004735_010 0.1164828916 - - PREDICTED: protein arginine N-methyltransferase PRMT10 [Vitis vinifera]
3 Hb_000457_160 0.1204366296 - - PREDICTED: uncharacterized protein LOC105633076 [Jatropha curcas]
4 Hb_000907_100 0.1282786189 transcription factor TF Family: zf-HD hypothetical protein POPTR_0012s03770g, partial [Populus trichocarpa]
5 Hb_019613_020 0.1354606371 - - phospholipase C, putative [Ricinus communis]
6 Hb_035524_030 0.1406157964 - - conserved hypothetical protein [Ricinus communis]
7 Hb_006602_010 0.1417668081 - - PREDICTED: tobamovirus multiplication protein 3 [Jatropha curcas]
8 Hb_000878_130 0.1426194089 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000035_120 0.143222775 - - PREDICTED: CBL-interacting serine/threonine-protein kinase 25-like [Jatropha curcas]
10 Hb_011640_020 0.1439044373 - - hypothetical protein VITISV_036432 [Vitis vinifera]
11 Hb_103873_010 0.146578008 - - hypothetical protein POPTR_0008s14260g [Populus trichocarpa]
12 Hb_002038_060 0.150906958 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
13 Hb_002687_050 0.1530881295 - - PREDICTED: uncharacterized protein LOC105782305 isoform X2 [Gossypium raimondii]
14 Hb_004126_010 0.1559836214 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
15 Hb_003813_100 0.1577036999 - - PREDICTED: proteasome subunit beta type-3-A [Cucumis sativus]
16 Hb_006602_020 0.1584578251 - - unknown [Medicago truncatula]
17 Hb_000700_090 0.1587856665 - - protein with unknown function [Ricinus communis]
18 Hb_000155_070 0.159386988 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
19 Hb_001476_100 0.161233764 - - conserved hypothetical protein [Ricinus communis]
20 Hb_001902_050 0.1649267367 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]

Gene co-expression network

sample Hb_006198_050 Hb_006198_050 Hb_004735_010 Hb_004735_010 Hb_006198_050--Hb_004735_010 Hb_000457_160 Hb_000457_160 Hb_006198_050--Hb_000457_160 Hb_000907_100 Hb_000907_100 Hb_006198_050--Hb_000907_100 Hb_019613_020 Hb_019613_020 Hb_006198_050--Hb_019613_020 Hb_035524_030 Hb_035524_030 Hb_006198_050--Hb_035524_030 Hb_006602_010 Hb_006602_010 Hb_006198_050--Hb_006602_010 Hb_000700_090 Hb_000700_090 Hb_004735_010--Hb_000700_090 Hb_001902_050 Hb_001902_050 Hb_004735_010--Hb_001902_050 Hb_006602_020 Hb_006602_020 Hb_004735_010--Hb_006602_020 Hb_004735_010--Hb_006602_010 Hb_000671_100 Hb_000671_100 Hb_004735_010--Hb_000671_100 Hb_000442_160 Hb_000442_160 Hb_004735_010--Hb_000442_160 Hb_011640_020 Hb_011640_020 Hb_000457_160--Hb_011640_020 Hb_005656_060 Hb_005656_060 Hb_000457_160--Hb_005656_060 Hb_000208_290 Hb_000208_290 Hb_000457_160--Hb_000208_290 Hb_022288_020 Hb_022288_020 Hb_000457_160--Hb_022288_020 Hb_002027_340 Hb_002027_340 Hb_000457_160--Hb_002027_340 Hb_004884_060 Hb_004884_060 Hb_000907_100--Hb_004884_060 Hb_000155_070 Hb_000155_070 Hb_000907_100--Hb_000155_070 Hb_000571_070 Hb_000571_070 Hb_000907_100--Hb_000571_070 Hb_002301_020 Hb_002301_020 Hb_000907_100--Hb_002301_020 Hb_004126_010 Hb_004126_010 Hb_000907_100--Hb_004126_010 Hb_003906_110 Hb_003906_110 Hb_000907_100--Hb_003906_110 Hb_019613_020--Hb_035524_030 Hb_127979_010 Hb_127979_010 Hb_019613_020--Hb_127979_010 Hb_000085_280 Hb_000085_280 Hb_019613_020--Hb_000085_280 Hb_176022_020 Hb_176022_020 Hb_019613_020--Hb_176022_020 Hb_003404_030 Hb_003404_030 Hb_019613_020--Hb_003404_030 Hb_000057_060 Hb_000057_060 Hb_019613_020--Hb_000057_060 Hb_035524_030--Hb_000085_280 Hb_005288_120 Hb_005288_120 Hb_035524_030--Hb_005288_120 Hb_035524_030--Hb_000671_100 Hb_024714_030 Hb_024714_030 Hb_035524_030--Hb_024714_030 Hb_035524_030--Hb_127979_010 Hb_006602_010--Hb_006602_020 Hb_002154_050 Hb_002154_050 Hb_006602_010--Hb_002154_050 Hb_005779_100 Hb_005779_100 Hb_006602_010--Hb_005779_100 Hb_006602_010--Hb_000700_090 Hb_005539_290 Hb_005539_290 Hb_006602_010--Hb_005539_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
179.164 18.3971 3.63156 12.6971 138.557 463.431
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
130.57 69.5281 232.049 31.886 9.99487

CAGE analysis