Hb_002027_340

Information

Type -
Description -
Location Contig2027: 201548-202033
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002027_340 0.0 - - -
2 Hb_000457_160 0.1725079362 - - PREDICTED: uncharacterized protein LOC105633076 [Jatropha curcas]
3 Hb_001433_220 0.1744322416 - - protein phosphatase, putative [Ricinus communis]
4 Hb_001902_050 0.184467526 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105648450 [Jatropha curcas]
5 Hb_005271_150 0.1949800707 - - PREDICTED: EKC/KEOPS complex subunit Tprkb-like [Malus domestica]
6 Hb_006935_050 0.1962515213 - - PREDICTED: probable glutathione peroxidase 2 [Populus euphratica]
7 Hb_006602_010 0.20087184 - - PREDICTED: tobamovirus multiplication protein 3 [Jatropha curcas]
8 Hb_005227_070 0.2009762638 - - serine/threonine protein kinase, putative [Ricinus communis]
9 Hb_002687_050 0.2024046145 - - PREDICTED: uncharacterized protein LOC105782305 isoform X2 [Gossypium raimondii]
10 Hb_025814_010 0.2041434111 - - hypothetical protein PRUPE_ppa015585mg [Prunus persica]
11 Hb_103873_010 0.2070712707 - - hypothetical protein POPTR_0008s14260g [Populus trichocarpa]
12 Hb_004852_030 0.2074875304 - - PREDICTED: uncharacterized protein LOC105639923 [Jatropha curcas]
13 Hb_000122_130 0.2105414496 - - conserved hypothetical protein [Ricinus communis]
14 Hb_007012_020 0.2105517808 - - hypothetical protein POPTR_0005s11940g [Populus trichocarpa]
15 Hb_032531_030 0.2118309768 - - PREDICTED: ultraviolet-B receptor UVR8 [Jatropha curcas]
16 Hb_020902_010 0.2118408678 - - PREDICTED: uncharacterized protein LOC104595551 [Nelumbo nucifera]
17 Hb_036034_010 0.2126239717 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000696_350 0.2126511818 - - ARM repeat superfamily protein isoform 2 [Theobroma cacao]
19 Hb_012286_050 0.2137044126 - - PREDICTED: syntaxin-61 [Jatropha curcas]
20 Hb_011287_090 0.2139733082 - - PREDICTED: GDP-mannose transporter GONST3-like [Populus euphratica]

Gene co-expression network

sample Hb_002027_340 Hb_002027_340 Hb_000457_160 Hb_000457_160 Hb_002027_340--Hb_000457_160 Hb_001433_220 Hb_001433_220 Hb_002027_340--Hb_001433_220 Hb_001902_050 Hb_001902_050 Hb_002027_340--Hb_001902_050 Hb_005271_150 Hb_005271_150 Hb_002027_340--Hb_005271_150 Hb_006935_050 Hb_006935_050 Hb_002027_340--Hb_006935_050 Hb_006602_010 Hb_006602_010 Hb_002027_340--Hb_006602_010 Hb_006198_050 Hb_006198_050 Hb_000457_160--Hb_006198_050 Hb_011640_020 Hb_011640_020 Hb_000457_160--Hb_011640_020 Hb_005656_060 Hb_005656_060 Hb_000457_160--Hb_005656_060 Hb_000208_290 Hb_000208_290 Hb_000457_160--Hb_000208_290 Hb_022288_020 Hb_022288_020 Hb_000457_160--Hb_022288_020 Hb_001433_220--Hb_006935_050 Hb_000229_040 Hb_000229_040 Hb_001433_220--Hb_000229_040 Hb_003195_060 Hb_003195_060 Hb_001433_220--Hb_003195_060 Hb_000049_070 Hb_000049_070 Hb_001433_220--Hb_000049_070 Hb_000436_080 Hb_000436_080 Hb_001433_220--Hb_000436_080 Hb_063134_010 Hb_063134_010 Hb_001433_220--Hb_063134_010 Hb_000700_090 Hb_000700_090 Hb_001902_050--Hb_000700_090 Hb_005539_290 Hb_005539_290 Hb_001902_050--Hb_005539_290 Hb_006602_020 Hb_006602_020 Hb_001902_050--Hb_006602_020 Hb_000365_360 Hb_000365_360 Hb_001902_050--Hb_000365_360 Hb_004735_010 Hb_004735_010 Hb_001902_050--Hb_004735_010 Hb_026048_100 Hb_026048_100 Hb_001902_050--Hb_026048_100 Hb_012286_050 Hb_012286_050 Hb_005271_150--Hb_012286_050 Hb_000117_010 Hb_000117_010 Hb_005271_150--Hb_000117_010 Hb_020902_010 Hb_020902_010 Hb_005271_150--Hb_020902_010 Hb_005271_150--Hb_001433_220 Hb_013405_040 Hb_013405_040 Hb_005271_150--Hb_013405_040 Hb_000671_100 Hb_000671_100 Hb_005271_150--Hb_000671_100 Hb_000139_380 Hb_000139_380 Hb_006935_050--Hb_000139_380 Hb_023292_010 Hb_023292_010 Hb_006935_050--Hb_023292_010 Hb_000099_200 Hb_000099_200 Hb_006935_050--Hb_000099_200 Hb_000025_480 Hb_000025_480 Hb_006935_050--Hb_000025_480 Hb_006935_050--Hb_000049_070 Hb_006602_010--Hb_006602_020 Hb_002154_050 Hb_002154_050 Hb_006602_010--Hb_002154_050 Hb_005779_100 Hb_005779_100 Hb_006602_010--Hb_005779_100 Hb_006602_010--Hb_000700_090 Hb_006602_010--Hb_005539_290 Hb_006602_010--Hb_004735_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.800108 0.264269 0.299526 0.658061 2.93875 6.94238
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.857837 1.79849 4.04922 0.505826 0.368399

CAGE analysis