Hb_000155_070

Information

Type transcription factor
Description TF Family: NAC
Location Contig155: 157132-163675
Sequence    

Annotation

kegg
ID rcu:RCOM_1673050
description NAC domain-containing protein 21/22, putative
nr
ID AHF27222.1
description NAC transcription factor [Hevea brasiliensis]
swissprot
ID O49459
description NAC domain-containing protein 73 OS=Arabidopsis thaliana GN=NAC073 PE=2 SV=1
trembl
ID A0A059SWK2
description NAC transcription factor OS=Hevea brasiliensis GN=NAC1 PE=2 SV=1
Gene Ontology
ID GO:0003677
description nac domain-containing protein 8

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13425: 157067-163534 , PASA_asmbl_13426: 157067-163670 , PASA_asmbl_13427: 157062-163534 , PASA_asmbl_13428: 156666-163534
cDNA
(Sanger)
(ID:Location)		 001_A17.ab1: 157067-162951 , 011_H22.ab1: 156666-162863 , 012_A24.ab1: 156780-162878 , 014_O14.ab1: 157801-163258 , 019_J24.ab1: 157067-162841 , 028_B23.ab1: 157067-157788 , 037_O14.ab1: 156666-162837 , 038_N08.ab1: 157062-162942 , 052_F05.ab1: 157062-162849

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000155_070 0.0 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
2 Hb_000914_060 0.0906771416 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
3 Hb_002301_020 0.0976832503 transcription factor TF Family: NAC NAC transcription factor [Hevea brasiliensis]
4 Hb_003327_060 0.1010422077 - - PREDICTED: uncharacterized protein LOC105645303 isoform X1 [Jatropha curcas]
5 Hb_003627_020 0.1037943692 - - PREDICTED: probable calcium-binding protein CML49 [Jatropha curcas]
6 Hb_000907_100 0.1084116617 transcription factor TF Family: zf-HD hypothetical protein POPTR_0012s03770g, partial [Populus trichocarpa]
7 Hb_004126_010 0.1179919733 - - PREDICTED: serine/threonine-protein kinase HT1 [Jatropha curcas]
8 Hb_005730_020 0.121860829 transcription factor TF Family: C2C2-Dof PREDICTED: dof zinc finger protein DOF3.1-like [Jatropha curcas]
9 Hb_000061_410 0.1232564032 desease resistance Gene Name: NB-ARC PREDICTED: putative disease resistance RPP13-like protein 1 [Jatropha curcas]
10 Hb_001252_160 0.1236026937 - - PREDICTED: PRA1 family protein A3 [Jatropha curcas]
11 Hb_000603_200 0.1271931334 - - PREDICTED: myosin-15 [Jatropha curcas]
12 Hb_014067_010 0.1288909661 - - hypothetical protein JCGZ_09524 [Jatropha curcas]
13 Hb_007178_010 0.1298598638 - - pseudo-hevein [Hevea brasiliensis]
14 Hb_003656_030 0.1321605167 - - PREDICTED: mechanosensitive ion channel protein 8-like [Jatropha curcas]
15 Hb_005488_100 0.1322760009 - - hypothetical protein JCGZ_00295 [Jatropha curcas]
16 Hb_002989_080 0.1324398721 - - hypothetical protein JCGZ_22462 [Jatropha curcas]
17 Hb_002038_060 0.1328385935 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC100265010 [Vitis vinifera]
18 Hb_019654_070 0.1366782627 - - PREDICTED: probable alpha-amylase 2 [Jatropha curcas]
19 Hb_000563_540 0.1378000269 - - PREDICTED: Fanconi anemia group I protein [Jatropha curcas]
20 Hb_009510_030 0.1384248968 - - PREDICTED: phosphoinositide phospholipase C 2-like [Jatropha curcas]

Gene co-expression network

sample Hb_000155_070 Hb_000155_070 Hb_000914_060 Hb_000914_060 Hb_000155_070--Hb_000914_060 Hb_002301_020 Hb_002301_020 Hb_000155_070--Hb_002301_020 Hb_003327_060 Hb_003327_060 Hb_000155_070--Hb_003327_060 Hb_003627_020 Hb_003627_020 Hb_000155_070--Hb_003627_020 Hb_000907_100 Hb_000907_100 Hb_000155_070--Hb_000907_100 Hb_004126_010 Hb_004126_010 Hb_000155_070--Hb_004126_010 Hb_000914_060--Hb_003327_060 Hb_000603_200 Hb_000603_200 Hb_000914_060--Hb_000603_200 Hb_000914_060--Hb_003627_020 Hb_000061_410 Hb_000061_410 Hb_000914_060--Hb_000061_410 Hb_001892_150 Hb_001892_150 Hb_000914_060--Hb_001892_150 Hb_000442_030 Hb_000442_030 Hb_002301_020--Hb_000442_030 Hb_000563_540 Hb_000563_540 Hb_002301_020--Hb_000563_540 Hb_005488_100 Hb_005488_100 Hb_002301_020--Hb_005488_100 Hb_000571_070 Hb_000571_070 Hb_002301_020--Hb_000571_070 Hb_010931_100 Hb_010931_100 Hb_002301_020--Hb_010931_100 Hb_138413_010 Hb_138413_010 Hb_003327_060--Hb_138413_010 Hb_000933_140 Hb_000933_140 Hb_003327_060--Hb_000933_140 Hb_004968_060 Hb_004968_060 Hb_003327_060--Hb_004968_060 Hb_005730_020 Hb_005730_020 Hb_003327_060--Hb_005730_020 Hb_003627_020--Hb_004126_010 Hb_003507_020 Hb_003507_020 Hb_003627_020--Hb_003507_020 Hb_003656_030 Hb_003656_030 Hb_003627_020--Hb_003656_030 Hb_007178_010 Hb_007178_010 Hb_003627_020--Hb_007178_010 Hb_005488_070 Hb_005488_070 Hb_003627_020--Hb_005488_070 Hb_009510_030 Hb_009510_030 Hb_003627_020--Hb_009510_030 Hb_004884_060 Hb_004884_060 Hb_000907_100--Hb_004884_060 Hb_000907_100--Hb_000571_070 Hb_000907_100--Hb_002301_020 Hb_000907_100--Hb_004126_010 Hb_003906_110 Hb_003906_110 Hb_000907_100--Hb_003906_110 Hb_004126_010--Hb_009510_030 Hb_014067_010 Hb_014067_010 Hb_004126_010--Hb_014067_010 Hb_026048_090 Hb_026048_090 Hb_004126_010--Hb_026048_090 Hb_000057_060 Hb_000057_060 Hb_004126_010--Hb_000057_060 Hb_003001_030 Hb_003001_030 Hb_004126_010--Hb_003001_030 Hb_002506_010 Hb_002506_010 Hb_004126_010--Hb_002506_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1527.31 27.1549 2.58886 27.1846 1378.33 2617.32
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1092.7 848.428 1056.97 108.858 7.00912

CAGE analysis