Hb_001575_040

Information

Type -
Description -
Location Contig1575: 41563-89850
Sequence    

Annotation

kegg
ID vvi:100254023
description U3 small nucleolar RNA-associated protein 25
nr
ID XP_012075149.1
description PREDICTED: U3 small nucleolar RNA-associated protein 25 isoform X2 [Jatropha curcas]
swissprot
ID B6JX19
description U3 small nucleolar RNA-associated protein 25 OS=Schizosaccharomyces japonicus (strain yFS275 / FY16936) GN=utp25 PE=3 SV=1
trembl
ID D7UBL1
description Putative uncharacterized protein OS=Vitis vinifera GN=VIT_11s0103g00230 PE=4 SV=1
Gene Ontology
ID GO:0005634
description u3 small nucleolar rna-associated protein 25 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_13743: 41593-56107 , PASA_asmbl_13744: 41593-56107 , PASA_asmbl_13745: 56144-57683 , PASA_asmbl_13746: 64844-71218 , PASA_asmbl_13747: 86142-86294 , PASA_asmbl_13748: 71258-87212
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001575_040 0.0 - - PREDICTED: U3 small nucleolar RNA-associated protein 25 isoform X2 [Jatropha curcas]
2 Hb_152079_010 0.0883568771 desease resistance Gene Name: NB-ARC PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105645015 [Jatropha curcas]
3 Hb_010423_020 0.1089369016 - - PREDICTED: pre-mRNA-splicing factor CWC25 homolog [Jatropha curcas]
4 Hb_000436_040 0.1117233153 - - PREDICTED: transportin-1 [Jatropha curcas]
5 Hb_024990_010 0.1128290861 - - PREDICTED: la protein 1 [Jatropha curcas]
6 Hb_004881_050 0.1135519254 - - PREDICTED: obg-like ATPase 1 [Jatropha curcas]
7 Hb_005000_100 0.1151605821 - - PCI domain-containing protein 2 [Morus notabilis]
8 Hb_004361_050 0.1209395628 - - ring finger containing protein, putative [Ricinus communis]
9 Hb_005608_030 0.1212409794 - - PREDICTED: uncharacterized protein LOC104110884 [Nicotiana tomentosiformis]
10 Hb_063047_010 0.1220377067 - - peroxisomal targeting signal type 1 (pts1) receptor, putative [Ricinus communis]
11 Hb_021409_170 0.1230481255 desease resistance Gene Name: ABC_tran ABC transporter family protein [Hevea brasiliensis]
12 Hb_001341_050 0.1234785723 - - ATP synthase D chain, mitochondrial [Theobroma cacao]
13 Hb_002893_150 0.1252878554 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL2 [Jatropha curcas]
14 Hb_000531_090 0.125479619 - - PREDICTED: transcription initiation factor IIF subunit alpha [Jatropha curcas]
15 Hb_010931_040 0.1261347143 - - PREDICTED: nijmegen breakage syndrome 1 protein [Jatropha curcas]
16 Hb_001609_010 0.127200482 desease resistance Gene Name: NB-ARC PREDICTED: putative inactive disease susceptibility protein LOV1 [Jatropha curcas]
17 Hb_000364_060 0.1277031865 - - JHL03K20.4 [Jatropha curcas]
18 Hb_000457_060 0.1278693908 - - glucose-6-phosphate dehydrogenase [Hevea brasiliensis]
19 Hb_002942_160 0.1287259621 - - PREDICTED: coiled-coil domain-containing protein SCD2 [Jatropha curcas]
20 Hb_002739_080 0.1290552747 - - cystathionine beta-lyase, putative [Ricinus communis]

Gene co-expression network

sample Hb_001575_040 Hb_001575_040 Hb_152079_010 Hb_152079_010 Hb_001575_040--Hb_152079_010 Hb_010423_020 Hb_010423_020 Hb_001575_040--Hb_010423_020 Hb_000436_040 Hb_000436_040 Hb_001575_040--Hb_000436_040 Hb_024990_010 Hb_024990_010 Hb_001575_040--Hb_024990_010 Hb_004881_050 Hb_004881_050 Hb_001575_040--Hb_004881_050 Hb_005000_100 Hb_005000_100 Hb_001575_040--Hb_005000_100 Hb_002893_150 Hb_002893_150 Hb_152079_010--Hb_002893_150 Hb_000531_090 Hb_000531_090 Hb_152079_010--Hb_000531_090 Hb_152079_010--Hb_010423_020 Hb_000789_080 Hb_000789_080 Hb_152079_010--Hb_000789_080 Hb_000915_050 Hb_000915_050 Hb_152079_010--Hb_000915_050 Hb_004195_280 Hb_004195_280 Hb_010423_020--Hb_004195_280 Hb_002174_060 Hb_002174_060 Hb_010423_020--Hb_002174_060 Hb_003006_060 Hb_003006_060 Hb_010423_020--Hb_003006_060 Hb_009265_080 Hb_009265_080 Hb_010423_020--Hb_009265_080 Hb_000364_060 Hb_000364_060 Hb_010423_020--Hb_000364_060 Hb_134364_010 Hb_134364_010 Hb_010423_020--Hb_134364_010 Hb_021409_170 Hb_021409_170 Hb_000436_040--Hb_021409_170 Hb_000023_190 Hb_000023_190 Hb_000436_040--Hb_000023_190 Hb_000347_130 Hb_000347_130 Hb_000436_040--Hb_000347_130 Hb_003464_020 Hb_003464_020 Hb_000436_040--Hb_003464_020 Hb_004218_240 Hb_004218_240 Hb_000436_040--Hb_004218_240 Hb_000436_040--Hb_002893_150 Hb_000331_190 Hb_000331_190 Hb_024990_010--Hb_000331_190 Hb_024990_010--Hb_000531_090 Hb_125092_020 Hb_125092_020 Hb_024990_010--Hb_125092_020 Hb_000340_160 Hb_000340_160 Hb_024990_010--Hb_000340_160 Hb_001221_040 Hb_001221_040 Hb_024990_010--Hb_001221_040 Hb_007668_040 Hb_007668_040 Hb_024990_010--Hb_007668_040 Hb_079326_010 Hb_079326_010 Hb_004881_050--Hb_079326_010 Hb_000457_060 Hb_000457_060 Hb_004881_050--Hb_000457_060 Hb_000372_040 Hb_000372_040 Hb_004881_050--Hb_000372_040 Hb_003434_060 Hb_003434_060 Hb_004881_050--Hb_003434_060 Hb_002811_120 Hb_002811_120 Hb_004881_050--Hb_002811_120 Hb_063047_010 Hb_063047_010 Hb_004881_050--Hb_063047_010 Hb_005000_100--Hb_004881_050 Hb_000152_740 Hb_000152_740 Hb_005000_100--Hb_000152_740 Hb_006913_040 Hb_006913_040 Hb_005000_100--Hb_006913_040 Hb_005000_100--Hb_024990_010 Hb_003581_020 Hb_003581_020 Hb_005000_100--Hb_003581_020 Hb_005000_100--Hb_001221_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.3649 7.36596 8.67264 7.73758 15.2256 50.6384
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5987 7.44936 9.07929 13.4153 7.37088

CAGE analysis