Hb_001723_050

Information

Type -
Description -
Location Contig1723: 62320-64011
Sequence    

Annotation

kegg
ID rcu:RCOM_1002420
description hypothetical protein
nr
ID AHI44616.1
description galactinol synthase-2 [Manihot esculenta]
swissprot
ID C7G304
description Galactinol synthase 2 OS=Solanum lycopersicum GN=GOLS2 PE=2 SV=1
trembl
ID W5ZS96
description Hexosyltransferase OS=Manihot esculenta GN=GolS2 PE=2 SV=1
Gene Ontology
ID GO:0047216
description galactinol synthase family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001723_050 0.0 - - galactinol synthase-2 [Manihot esculenta]
2 Hb_001377_440 0.2199658277 - - -
3 Hb_001969_050 0.2807152881 - - PREDICTED: uncharacterized protein LOC105634920 isoform X1 [Jatropha curcas]
4 Hb_033222_010 0.2940464405 - - PREDICTED: uncharacterized protein LOC105173350 [Sesamum indicum]
5 Hb_006995_020 0.3082774965 - - hypothetical protein glysoja_017339 [Glycine soja]
6 Hb_018591_040 0.318370722 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
7 Hb_007044_280 0.3220125064 - - PREDICTED: uncharacterized protein LOC105123357 [Populus euphratica]
8 Hb_053582_010 0.3255745507 - - -
9 Hb_000003_690 0.3288838001 - - -
10 Hb_000906_050 0.3366631827 - - -
11 Hb_003702_050 0.3457280803 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
12 Hb_075642_010 0.3498150616 - - PREDICTED: uncharacterized protein LOC105647831 [Jatropha curcas]
13 Hb_007124_010 0.3554656051 - - unnamed protein product [Coffea canephora]
14 Hb_011537_120 0.3578884848 - - -
15 Hb_101151_030 0.3595005318 - - -
16 Hb_169488_010 0.3599923507 - - PREDICTED: choline monooxygenase, chloroplastic-like [Populus euphratica]
17 Hb_000951_050 0.3632402304 - - -
18 Hb_000028_210 0.3637401006 - - hypothetical protein CISIN_1g0103302mg, partial [Citrus sinensis]
19 Hb_034579_010 0.3672523726 - - PREDICTED: nudix hydrolase 27, chloroplastic [Jatropha curcas]
20 Hb_005241_020 0.3696613689 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]

Gene co-expression network

sample Hb_001723_050 Hb_001723_050 Hb_001377_440 Hb_001377_440 Hb_001723_050--Hb_001377_440 Hb_001969_050 Hb_001969_050 Hb_001723_050--Hb_001969_050 Hb_033222_010 Hb_033222_010 Hb_001723_050--Hb_033222_010 Hb_006995_020 Hb_006995_020 Hb_001723_050--Hb_006995_020 Hb_018591_040 Hb_018591_040 Hb_001723_050--Hb_018591_040 Hb_007044_280 Hb_007044_280 Hb_001723_050--Hb_007044_280 Hb_000906_050 Hb_000906_050 Hb_001377_440--Hb_000906_050 Hb_053582_010 Hb_053582_010 Hb_001377_440--Hb_053582_010 Hb_001377_440--Hb_006995_020 Hb_033883_050 Hb_033883_050 Hb_001377_440--Hb_033883_050 Hb_001014_200 Hb_001014_200 Hb_001377_440--Hb_001014_200 Hb_101151_030 Hb_101151_030 Hb_001969_050--Hb_101151_030 Hb_001969_050--Hb_053582_010 Hb_144552_010 Hb_144552_010 Hb_001969_050--Hb_144552_010 Hb_000951_050 Hb_000951_050 Hb_001969_050--Hb_000951_050 Hb_003623_020 Hb_003623_020 Hb_001969_050--Hb_003623_020 Hb_015930_010 Hb_015930_010 Hb_001969_050--Hb_015930_010 Hb_000227_050 Hb_000227_050 Hb_033222_010--Hb_000227_050 Hb_012218_020 Hb_012218_020 Hb_033222_010--Hb_012218_020 Hb_000028_210 Hb_000028_210 Hb_033222_010--Hb_000028_210 Hb_000002_420 Hb_000002_420 Hb_033222_010--Hb_000002_420 Hb_000160_160 Hb_000160_160 Hb_033222_010--Hb_000160_160 Hb_006995_020--Hb_018591_040 Hb_006995_020--Hb_007044_280 Hb_007659_010 Hb_007659_010 Hb_006995_020--Hb_007659_010 Hb_041813_070 Hb_041813_070 Hb_006995_020--Hb_041813_070 Hb_006995_020--Hb_001969_050 Hb_018591_040--Hb_007044_280 Hb_018591_040--Hb_007659_010 Hb_002224_050 Hb_002224_050 Hb_018591_040--Hb_002224_050 Hb_041476_010 Hb_041476_010 Hb_018591_040--Hb_041476_010 Hb_004041_010 Hb_004041_010 Hb_018591_040--Hb_004041_010 Hb_007044_280--Hb_007659_010 Hb_007044_280--Hb_002224_050 Hb_007044_280--Hb_041476_010 Hb_007044_280--Hb_004041_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0.0218735 0.585531
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0998598 0.0392702 0 0 0.160811

CAGE analysis