Hb_041813_070

Information

Type -
Description -
Location Contig41813: 33256-33615
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_41364: 32712-33331
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_041813_070 0.0 - - -
2 Hb_006995_020 0.2682639472 - - hypothetical protein glysoja_017339 [Glycine soja]
3 Hb_018591_040 0.2791115014 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
4 Hb_007044_280 0.2831891138 - - PREDICTED: uncharacterized protein LOC105123357 [Populus euphratica]
5 Hb_001969_050 0.2996229673 - - PREDICTED: uncharacterized protein LOC105634920 isoform X1 [Jatropha curcas]
6 Hb_020469_010 0.3054564109 - - -
7 Hb_144552_010 0.3160297064 - - CC-NBS-LRR protein, putative [Theobroma cacao]
8 Hb_004947_070 0.3270631628 - - hypothetical protein CICLE_v100140161mg, partial [Citrus clementina]
9 Hb_007659_010 0.3421152767 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Jatropha curcas]
10 Hb_000101_280 0.3448369174 - - hypothetical protein POPTR_0018s02450g [Populus trichocarpa]
11 Hb_002540_040 0.3451701175 - - BnaC05g39550D [Brassica napus]
12 Hb_001762_070 0.3466011756 - - -
13 Hb_003209_160 0.355364045 - - PREDICTED: putative SNAP25 homologous protein SNAP30 [Populus euphratica]
14 Hb_065395_010 0.3564524621 - - hypothetical protein POPTR_0014s14760g, partial [Populus trichocarpa]
15 Hb_005241_020 0.3584970638 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
16 Hb_001377_440 0.3590095655 - - -
17 Hb_053582_010 0.3602329971 - - -
18 Hb_001241_060 0.36538858 - - -
19 Hb_010024_010 0.3655771666 - - Ran GTPase binding protein, putative [Ricinus communis]
20 Hb_022593_060 0.3668020839 - - -

Gene co-expression network

sample Hb_041813_070 Hb_041813_070 Hb_006995_020 Hb_006995_020 Hb_041813_070--Hb_006995_020 Hb_018591_040 Hb_018591_040 Hb_041813_070--Hb_018591_040 Hb_007044_280 Hb_007044_280 Hb_041813_070--Hb_007044_280 Hb_001969_050 Hb_001969_050 Hb_041813_070--Hb_001969_050 Hb_020469_010 Hb_020469_010 Hb_041813_070--Hb_020469_010 Hb_144552_010 Hb_144552_010 Hb_041813_070--Hb_144552_010 Hb_006995_020--Hb_018591_040 Hb_006995_020--Hb_007044_280 Hb_007659_010 Hb_007659_010 Hb_006995_020--Hb_007659_010 Hb_001377_440 Hb_001377_440 Hb_006995_020--Hb_001377_440 Hb_006995_020--Hb_001969_050 Hb_018591_040--Hb_007044_280 Hb_018591_040--Hb_007659_010 Hb_002224_050 Hb_002224_050 Hb_018591_040--Hb_002224_050 Hb_041476_010 Hb_041476_010 Hb_018591_040--Hb_041476_010 Hb_004041_010 Hb_004041_010 Hb_018591_040--Hb_004041_010 Hb_007044_280--Hb_007659_010 Hb_007044_280--Hb_002224_050 Hb_007044_280--Hb_041476_010 Hb_007044_280--Hb_004041_010 Hb_101151_030 Hb_101151_030 Hb_001969_050--Hb_101151_030 Hb_053582_010 Hb_053582_010 Hb_001969_050--Hb_053582_010 Hb_001969_050--Hb_144552_010 Hb_000951_050 Hb_000951_050 Hb_001969_050--Hb_000951_050 Hb_003623_020 Hb_003623_020 Hb_001969_050--Hb_003623_020 Hb_015930_010 Hb_015930_010 Hb_001969_050--Hb_015930_010 Hb_184746_010 Hb_184746_010 Hb_020469_010--Hb_184746_010 Hb_004143_030 Hb_004143_030 Hb_020469_010--Hb_004143_030 Hb_126395_010 Hb_126395_010 Hb_020469_010--Hb_126395_010 Hb_115031_030 Hb_115031_030 Hb_020469_010--Hb_115031_030 Hb_004542_020 Hb_004542_020 Hb_020469_010--Hb_004542_020 Hb_010172_060 Hb_010172_060 Hb_144552_010--Hb_010172_060 Hb_144552_010--Hb_003623_020 Hb_004947_070 Hb_004947_070 Hb_144552_010--Hb_004947_070 Hb_144552_010--Hb_101151_030 Hb_001676_040 Hb_001676_040 Hb_144552_010--Hb_001676_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.179823 0 0.108895 0 0 1.42388
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.400206

CAGE analysis