Hb_184746_010

Information

Type -
Description -
Location Contig184746: 2-121
Sequence    

Annotation

kegg
ID tcc:TCM_041718
description HSP20-like chaperones superfamily protein
nr
ID XP_007016258.1
description HSP20-like chaperones superfamily protein [Theobroma cacao]
swissprot
ID O82011
description 17.7 kDa class I heat shock protein OS=Solanum peruvianum PE=2 SV=1
trembl
ID A0A061GXF6
description HSP20-like chaperones superfamily protein OS=Theobroma cacao GN=TCM_041718 PE=3 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_184746_010 0.0 - - HSP20-like chaperones superfamily protein [Theobroma cacao]
2 Hb_078901_020 0.2040761419 - - PREDICTED: uncharacterized protein LOC105648117 [Jatropha curcas]
3 Hb_001303_070 0.2304987713 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X2 [Prunus mume]
4 Hb_020469_010 0.2876424263 - - -
5 Hb_183574_010 0.3313639332 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
6 Hb_004449_240 0.3339975829 transcription factor TF Family: TCP PREDICTED: transcription factor TCP8 [Jatropha curcas]
7 Hb_062741_010 0.3438253221 - - -
8 Hb_037281_010 0.3462087056 - - hypothetical protein PRUPE_ppa021229mg [Prunus persica]
9 Hb_005241_020 0.3501169025 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
10 Hb_008053_020 0.3602882611 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
11 Hb_000946_170 0.3661084689 - - PREDICTED: 2-aminoethanethiol dioxygenase-like [Jatropha curcas]
12 Hb_030215_010 0.3750549524 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
13 Hb_004542_020 0.3764329647 - - hypothetical chloroplast RF1 [Hevea brasiliensis]
14 Hb_074979_030 0.3773341078 - - HSP20-like chaperones superfamily protein [Theobroma cacao]
15 Hb_001439_030 0.3799492866 - - -
16 Hb_001709_130 0.3822144111 - - PREDICTED: uncharacterized protein LOC105636491 [Jatropha curcas]
17 Hb_002235_290 0.3858929858 - - PREDICTED: casparian strip membrane protein 5 [Jatropha curcas]
18 Hb_006634_010 0.3867016356 - - -
19 Hb_118014_010 0.3873585352 - - PREDICTED: uncharacterized protein LOC104214283 [Nicotiana sylvestris]
20 Hb_000024_070 0.3899200153 - - PREDICTED: dnaJ homolog subfamily B member 6-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_184746_010 Hb_184746_010 Hb_078901_020 Hb_078901_020 Hb_184746_010--Hb_078901_020 Hb_001303_070 Hb_001303_070 Hb_184746_010--Hb_001303_070 Hb_020469_010 Hb_020469_010 Hb_184746_010--Hb_020469_010 Hb_183574_010 Hb_183574_010 Hb_184746_010--Hb_183574_010 Hb_004449_240 Hb_004449_240 Hb_184746_010--Hb_004449_240 Hb_062741_010 Hb_062741_010 Hb_184746_010--Hb_062741_010 Hb_078901_020--Hb_001303_070 Hb_118014_010 Hb_118014_010 Hb_078901_020--Hb_118014_010 Hb_027380_250 Hb_027380_250 Hb_078901_020--Hb_027380_250 Hb_000045_060 Hb_000045_060 Hb_078901_020--Hb_000045_060 Hb_007193_050 Hb_007193_050 Hb_078901_020--Hb_007193_050 Hb_089341_010 Hb_089341_010 Hb_001303_070--Hb_089341_010 Hb_002426_010 Hb_002426_010 Hb_001303_070--Hb_002426_010 Hb_000318_240 Hb_000318_240 Hb_001303_070--Hb_000318_240 Hb_002003_110 Hb_002003_110 Hb_001303_070--Hb_002003_110 Hb_041813_070 Hb_041813_070 Hb_020469_010--Hb_041813_070 Hb_004143_030 Hb_004143_030 Hb_020469_010--Hb_004143_030 Hb_126395_010 Hb_126395_010 Hb_020469_010--Hb_126395_010 Hb_115031_030 Hb_115031_030 Hb_020469_010--Hb_115031_030 Hb_004542_020 Hb_004542_020 Hb_020469_010--Hb_004542_020 Hb_001709_130 Hb_001709_130 Hb_183574_010--Hb_001709_130 Hb_021068_010 Hb_021068_010 Hb_183574_010--Hb_021068_010 Hb_004361_020 Hb_004361_020 Hb_183574_010--Hb_004361_020 Hb_005989_010 Hb_005989_010 Hb_183574_010--Hb_005989_010 Hb_047661_010 Hb_047661_010 Hb_183574_010--Hb_047661_010 Hb_005241_020 Hb_005241_020 Hb_183574_010--Hb_005241_020 Hb_001718_050 Hb_001718_050 Hb_004449_240--Hb_001718_050 Hb_002235_120 Hb_002235_120 Hb_004449_240--Hb_002235_120 Hb_002742_070 Hb_002742_070 Hb_004449_240--Hb_002742_070 Hb_002159_030 Hb_002159_030 Hb_004449_240--Hb_002159_030 Hb_001508_020 Hb_001508_020 Hb_004449_240--Hb_001508_020 Hb_008029_020 Hb_008029_020 Hb_004449_240--Hb_008029_020 Hb_004195_260 Hb_004195_260 Hb_062741_010--Hb_004195_260 Hb_062741_010--Hb_005241_020 Hb_153142_010 Hb_153142_010 Hb_062741_010--Hb_153142_010 Hb_188319_010 Hb_188319_010 Hb_062741_010--Hb_188319_010 Hb_062741_010--Hb_183574_010 Hb_001160_010 Hb_001160_010 Hb_062741_010--Hb_001160_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.2676 326.063 690.234 0 1042.7 2303.5
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 887.302

CAGE analysis