Hb_001303_070

Information

Type -
Description -
Location Contig1303: 127938-162320
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa000017mg
description hypothetical protein
nr
ID XP_008242682.1
description PREDICTED: dnaJ homolog subfamily C GRV2 isoform X2 [Prunus mume]
swissprot
ID F4IVL6
description DnaJ homolog subfamily C GRV2 OS=Arabidopsis thaliana GN=GRV2 PE=1 SV=1
trembl
ID M5VSF2
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa000017mg PE=4 SV=1
Gene Ontology
ID GO:0005770
description dnaj homolog subfamily c grv2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_09063: 144336-153335
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001303_070 0.0 - - PREDICTED: dnaJ homolog subfamily C GRV2 isoform X2 [Prunus mume]
2 Hb_078901_020 0.1712262782 - - PREDICTED: uncharacterized protein LOC105648117 [Jatropha curcas]
3 Hb_184746_010 0.2304987713 - - HSP20-like chaperones superfamily protein [Theobroma cacao]
4 Hb_089341_010 0.2651489929 - - Uncharacterized protein TCM_018339 [Theobroma cacao]
5 Hb_002426_010 0.2983333772 - - hypothetical protein PRUPE_ppa022673mg [Prunus persica]
6 Hb_000318_240 0.3334701668 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002003_110 0.3367647818 - - PREDICTED: uncharacterized protein LOC105634406 [Jatropha curcas]
8 Hb_012395_080 0.3454850551 - - PREDICTED: pentatricopeptide repeat-containing protein At4g19890 [Jatropha curcas]
9 Hb_000510_220 0.3484690502 - - -
10 Hb_009189_060 0.3488500267 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Jatropha curcas]
11 Hb_004483_020 0.3584193828 - - -
12 Hb_006634_010 0.3604929771 - - -
13 Hb_010997_100 0.362827157 transcription factor TF Family: mTERF -
14 Hb_006040_040 0.3659570996 - - Putative mitochondrial protein [Glycine soja]
15 Hb_001031_060 0.3678766965 - - PREDICTED: uncharacterized protein LOC103940329 [Pyrus x bretschneideri]
16 Hb_157029_010 0.3679045298 - - PREDICTED: uncharacterized protein LOC101497268 [Cicer arietinum]
17 Hb_119886_040 0.3737149688 - - -
18 Hb_009372_010 0.3742258198 - - -
19 Hb_002194_070 0.3744555189 - - -
20 Hb_005715_020 0.3757553745 - - PREDICTED: ras-related protein RABC2a-like isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_001303_070 Hb_001303_070 Hb_078901_020 Hb_078901_020 Hb_001303_070--Hb_078901_020 Hb_184746_010 Hb_184746_010 Hb_001303_070--Hb_184746_010 Hb_089341_010 Hb_089341_010 Hb_001303_070--Hb_089341_010 Hb_002426_010 Hb_002426_010 Hb_001303_070--Hb_002426_010 Hb_000318_240 Hb_000318_240 Hb_001303_070--Hb_000318_240 Hb_002003_110 Hb_002003_110 Hb_001303_070--Hb_002003_110 Hb_078901_020--Hb_184746_010 Hb_118014_010 Hb_118014_010 Hb_078901_020--Hb_118014_010 Hb_027380_250 Hb_027380_250 Hb_078901_020--Hb_027380_250 Hb_000045_060 Hb_000045_060 Hb_078901_020--Hb_000045_060 Hb_007193_050 Hb_007193_050 Hb_078901_020--Hb_007193_050 Hb_020469_010 Hb_020469_010 Hb_184746_010--Hb_020469_010 Hb_183574_010 Hb_183574_010 Hb_184746_010--Hb_183574_010 Hb_004449_240 Hb_004449_240 Hb_184746_010--Hb_004449_240 Hb_062741_010 Hb_062741_010 Hb_184746_010--Hb_062741_010 Hb_089341_010--Hb_002426_010 Hb_089341_010--Hb_002003_110 Hb_004483_020 Hb_004483_020 Hb_089341_010--Hb_004483_020 Hb_137515_010 Hb_137515_010 Hb_089341_010--Hb_137515_010 Hb_061365_010 Hb_061365_010 Hb_089341_010--Hb_061365_010 Hb_000510_220 Hb_000510_220 Hb_002426_010--Hb_000510_220 Hb_002426_010--Hb_004483_020 Hb_009189_060 Hb_009189_060 Hb_002426_010--Hb_009189_060 Hb_001031_060 Hb_001031_060 Hb_002426_010--Hb_001031_060 Hb_006634_010 Hb_006634_010 Hb_002426_010--Hb_006634_010 Hb_002686_330 Hb_002686_330 Hb_000318_240--Hb_002686_330 Hb_008725_140 Hb_008725_140 Hb_000318_240--Hb_008725_140 Hb_003026_030 Hb_003026_030 Hb_000318_240--Hb_003026_030 Hb_000189_430 Hb_000189_430 Hb_000318_240--Hb_000189_430 Hb_001269_510 Hb_001269_510 Hb_000318_240--Hb_001269_510 Hb_000997_150 Hb_000997_150 Hb_000318_240--Hb_000997_150 Hb_027337_070 Hb_027337_070 Hb_002003_110--Hb_027337_070 Hb_000407_060 Hb_000407_060 Hb_002003_110--Hb_000407_060 Hb_004361_030 Hb_004361_030 Hb_002003_110--Hb_004361_030 Hb_172632_020 Hb_172632_020 Hb_002003_110--Hb_172632_020 Hb_005269_030 Hb_005269_030 Hb_002003_110--Hb_005269_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.108975 0.0810451 0.0020977 0.075381 0.179406
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.00204079 0.0555813

CAGE analysis