Hb_118014_010

Information

Type -
Description -
Location Contig118014: 10-926
Sequence    

Annotation

kegg
ID sly:104645605
description uncharacterized LOC104645605
nr
ID XP_009762236.1
description PREDICTED: uncharacterized protein LOC104214283 [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID M1DII3
description Uncharacterized protein OS=Solanum tuberosum GN=PGSC0003DMG400039181 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_118014_010 0.0 - - PREDICTED: uncharacterized protein LOC104214283 [Nicotiana sylvestris]
2 Hb_027380_250 0.142125135 - - Isoflavone reductase, putative [Ricinus communis]
3 Hb_000045_060 0.1528918307 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
4 Hb_007193_050 0.1863737283 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_004981_010 0.25998197 - - -
6 Hb_078901_020 0.2659244875 - - PREDICTED: uncharacterized protein LOC105648117 [Jatropha curcas]
7 Hb_001758_030 0.3021694002 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
8 Hb_003717_020 0.3166461232 - - -
9 Hb_065395_020 0.3257109906 - - receptor-kinase, putative [Ricinus communis]
10 Hb_176819_010 0.3347894189 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
11 Hb_132317_010 0.3371864881 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
12 Hb_001021_050 0.3386553191 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
13 Hb_005241_020 0.3446834224 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC103696607 [Phoenix dactylifera]
14 Hb_024468_040 0.3563568755 - - -
15 Hb_003992_200 0.3591133056 - - -
16 Hb_006040_040 0.3616075093 - - Putative mitochondrial protein [Glycine soja]
17 Hb_027204_010 0.3620719306 - - -
18 Hb_065661_010 0.3700173639 - - PREDICTED: uncharacterized protein LOC105644346 [Jatropha curcas]
19 Hb_153142_010 0.3704723482 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
20 Hb_000140_430 0.3712452603 - - -

Gene co-expression network

sample Hb_118014_010 Hb_118014_010 Hb_027380_250 Hb_027380_250 Hb_118014_010--Hb_027380_250 Hb_000045_060 Hb_000045_060 Hb_118014_010--Hb_000045_060 Hb_007193_050 Hb_007193_050 Hb_118014_010--Hb_007193_050 Hb_004981_010 Hb_004981_010 Hb_118014_010--Hb_004981_010 Hb_078901_020 Hb_078901_020 Hb_118014_010--Hb_078901_020 Hb_001758_030 Hb_001758_030 Hb_118014_010--Hb_001758_030 Hb_027380_250--Hb_007193_050 Hb_027380_250--Hb_000045_060 Hb_132317_010 Hb_132317_010 Hb_027380_250--Hb_132317_010 Hb_027380_250--Hb_078901_020 Hb_001021_050 Hb_001021_050 Hb_027380_250--Hb_001021_050 Hb_000045_060--Hb_007193_050 Hb_065661_010 Hb_065661_010 Hb_000045_060--Hb_065661_010 Hb_000045_060--Hb_004981_010 Hb_003717_020 Hb_003717_020 Hb_000045_060--Hb_003717_020 Hb_007193_050--Hb_132317_010 Hb_024468_040 Hb_024468_040 Hb_007193_050--Hb_024468_040 Hb_133047_030 Hb_133047_030 Hb_007193_050--Hb_133047_030 Hb_004981_010--Hb_003717_020 Hb_065395_020 Hb_065395_020 Hb_004981_010--Hb_065395_020 Hb_004981_010--Hb_001021_050 Hb_004981_010--Hb_001758_030 Hb_181402_010 Hb_181402_010 Hb_004981_010--Hb_181402_010 Hb_001303_070 Hb_001303_070 Hb_078901_020--Hb_001303_070 Hb_184746_010 Hb_184746_010 Hb_078901_020--Hb_184746_010 Hb_078901_020--Hb_000045_060 Hb_078901_020--Hb_007193_050 Hb_097981_010 Hb_097981_010 Hb_001758_030--Hb_097981_010 Hb_004678_070 Hb_004678_070 Hb_001758_030--Hb_004678_070 Hb_001758_030--Hb_181402_010 Hb_105123_020 Hb_105123_020 Hb_001758_030--Hb_105123_020 Hb_001758_030--Hb_003717_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0673463 0 0 0.0311773 0.101331
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.119727

CAGE analysis