Hb_001021_050

Information

Type -
Description -
Location Contig1021: 30120-30860
Sequence    

Annotation

kegg
ID cmo:103498182
description uncharacterized LOC103498182
nr
ID WP_042918419.1
description MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
swissprot
ID -
description -
trembl
ID A0A0B0N6X1
description Zinc finger CCHC domain-containing 8 OS=Gossypium arboreum GN=F383_35550 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001021_050 0.0 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
2 Hb_012538_010 0.1802801006 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_004981_010 0.223271198 - - -
4 Hb_143398_020 0.2239692975 - - PREDICTED: 21 kDa protein [Populus euphratica]
5 Hb_003717_020 0.2288487436 - - -
6 Hb_132317_010 0.2771596775 - - hypothetical protein POPTR_0013s02830g [Populus trichocarpa]
7 Hb_133047_030 0.2796426905 - - nuclear acid binding protein, putative [Ricinus communis]
8 Hb_024468_040 0.2836731866 - - -
9 Hb_007193_050 0.2904280675 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_065395_020 0.2974870708 - - receptor-kinase, putative [Ricinus communis]
11 Hb_181402_010 0.2978829371 - - PREDICTED: uncharacterized protein LOC104905886 [Beta vulgaris subsp. vulgaris]
12 Hb_062317_020 0.2980923726 - - conserved hypothetical protein [Ricinus communis]
13 Hb_027380_250 0.2987812489 - - Isoflavone reductase, putative [Ricinus communis]
14 Hb_006274_020 0.3064956105 - - structural constituent of cell wall, putative [Ricinus communis]
15 Hb_000045_060 0.3067044295 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
16 Hb_004235_020 0.3089735191 - - PREDICTED: uncharacterized protein LOC103322555 [Prunus mume]
17 Hb_151411_010 0.3150255413 - - -
18 Hb_000192_060 0.3152323208 - - -
19 Hb_002056_140 0.3162314635 - - -
20 Hb_001301_070 0.3170468956 - - -

Gene co-expression network

sample Hb_001021_050 Hb_001021_050 Hb_012538_010 Hb_012538_010 Hb_001021_050--Hb_012538_010 Hb_004981_010 Hb_004981_010 Hb_001021_050--Hb_004981_010 Hb_143398_020 Hb_143398_020 Hb_001021_050--Hb_143398_020 Hb_003717_020 Hb_003717_020 Hb_001021_050--Hb_003717_020 Hb_132317_010 Hb_132317_010 Hb_001021_050--Hb_132317_010 Hb_133047_030 Hb_133047_030 Hb_001021_050--Hb_133047_030 Hb_006274_020 Hb_006274_020 Hb_012538_010--Hb_006274_020 Hb_019641_020 Hb_019641_020 Hb_012538_010--Hb_019641_020 Hb_000832_010 Hb_000832_010 Hb_012538_010--Hb_000832_010 Hb_012538_010--Hb_133047_030 Hb_000280_120 Hb_000280_120 Hb_012538_010--Hb_000280_120 Hb_004981_010--Hb_003717_020 Hb_065395_020 Hb_065395_020 Hb_004981_010--Hb_065395_020 Hb_001758_030 Hb_001758_030 Hb_004981_010--Hb_001758_030 Hb_181402_010 Hb_181402_010 Hb_004981_010--Hb_181402_010 Hb_000045_060 Hb_000045_060 Hb_004981_010--Hb_000045_060 Hb_004235_020 Hb_004235_020 Hb_143398_020--Hb_004235_020 Hb_009888_010 Hb_009888_010 Hb_143398_020--Hb_009888_010 Hb_143398_020--Hb_065395_020 Hb_032717_090 Hb_032717_090 Hb_143398_020--Hb_032717_090 Hb_123951_010 Hb_123951_010 Hb_143398_020--Hb_123951_010 Hb_003717_020--Hb_181402_010 Hb_003717_020--Hb_065395_020 Hb_003717_020--Hb_000045_060 Hb_111985_030 Hb_111985_030 Hb_003717_020--Hb_111985_030 Hb_132317_010--Hb_133047_030 Hb_007193_050 Hb_007193_050 Hb_132317_010--Hb_007193_050 Hb_000346_080 Hb_000346_080 Hb_132317_010--Hb_000346_080 Hb_024468_040 Hb_024468_040 Hb_132317_010--Hb_024468_040 Hb_027380_250 Hb_027380_250 Hb_132317_010--Hb_027380_250 Hb_132317_010--Hb_012538_010 Hb_133047_030--Hb_000346_080 Hb_006103_040 Hb_006103_040 Hb_133047_030--Hb_006103_040 Hb_033286_020 Hb_033286_020 Hb_133047_030--Hb_033286_020 Hb_002888_080 Hb_002888_080 Hb_133047_030--Hb_002888_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.113199 0 0 0 0.0671099
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0333167 0.156691

CAGE analysis