Hb_001758_030

Information

Type -
Description -
Location Contig1758: 45949-47642
Sequence    

Annotation

kegg
ID cam:101511883
description genome polyprotein-like
nr
ID KDP34893.1
description hypothetical protein JCGZ_09181 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID K7KWX1
description Uncharacterized protein (Fragment) OS=Glycine max PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_001758_030 0.0 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
2 Hb_097981_010 0.1337335142 - - -
3 Hb_004678_070 0.1969765516 - - PREDICTED: putative receptor-like protein kinase At3g47110 [Jatropha curcas]
4 Hb_004981_010 0.2292906618 - - -
5 Hb_181402_010 0.2558420676 - - PREDICTED: uncharacterized protein LOC104905886 [Beta vulgaris subsp. vulgaris]
6 Hb_105123_020 0.2813306785 - - conserved hypothetical protein [Ricinus communis]
7 Hb_003717_020 0.2854181906 - - -
8 Hb_065395_020 0.2939421745 - - receptor-kinase, putative [Ricinus communis]
9 Hb_118014_010 0.3021694002 - - PREDICTED: uncharacterized protein LOC104214283 [Nicotiana sylvestris]
10 Hb_001021_050 0.3174017931 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
11 Hb_000045_060 0.3181261911 - - serine-threonine protein kinase, plant-type, putative [Ricinus communis]
12 Hb_176819_010 0.3256601134 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
13 Hb_062317_020 0.3433662921 - - conserved hypothetical protein [Ricinus communis]
14 Hb_024468_040 0.3460132503 - - -
15 Hb_007317_090 0.349648868 - - PREDICTED: glucan endo-1,3-beta-glucosidase 14 [Jatropha curcas]
16 Hb_143398_020 0.3519786288 - - PREDICTED: 21 kDa protein [Populus euphratica]
17 Hb_095399_010 0.3530340555 - - cytochrome b/f complex subunit IV [Sphagnum fimbriatum]
18 Hb_137338_010 0.3537943947 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RGA2-like [Jatropha curcas]
19 Hb_027380_250 0.3542240293 - - Isoflavone reductase, putative [Ricinus communis]
20 Hb_027204_010 0.3568242619 - - -

Gene co-expression network

sample Hb_001758_030 Hb_001758_030 Hb_097981_010 Hb_097981_010 Hb_001758_030--Hb_097981_010 Hb_004678_070 Hb_004678_070 Hb_001758_030--Hb_004678_070 Hb_004981_010 Hb_004981_010 Hb_001758_030--Hb_004981_010 Hb_181402_010 Hb_181402_010 Hb_001758_030--Hb_181402_010 Hb_105123_020 Hb_105123_020 Hb_001758_030--Hb_105123_020 Hb_003717_020 Hb_003717_020 Hb_001758_030--Hb_003717_020 Hb_097981_010--Hb_004678_070 Hb_097981_010--Hb_105123_020 Hb_095399_010 Hb_095399_010 Hb_097981_010--Hb_095399_010 Hb_097981_010--Hb_004981_010 Hb_062317_020 Hb_062317_020 Hb_097981_010--Hb_062317_020 Hb_065395_020 Hb_065395_020 Hb_004678_070--Hb_065395_020 Hb_003540_070 Hb_003540_070 Hb_004678_070--Hb_003540_070 Hb_004678_070--Hb_004981_010 Hb_002471_280 Hb_002471_280 Hb_004678_070--Hb_002471_280 Hb_004981_010--Hb_003717_020 Hb_004981_010--Hb_065395_020 Hb_001021_050 Hb_001021_050 Hb_004981_010--Hb_001021_050 Hb_004981_010--Hb_181402_010 Hb_000045_060 Hb_000045_060 Hb_004981_010--Hb_000045_060 Hb_181402_010--Hb_003717_020 Hb_055314_010 Hb_055314_010 Hb_181402_010--Hb_055314_010 Hb_042463_050 Hb_042463_050 Hb_181402_010--Hb_042463_050 Hb_027204_010 Hb_027204_010 Hb_181402_010--Hb_027204_010 Hb_034359_010 Hb_034359_010 Hb_105123_020--Hb_034359_010 Hb_007595_060 Hb_007595_060 Hb_105123_020--Hb_007595_060 Hb_001519_230 Hb_001519_230 Hb_105123_020--Hb_001519_230 Hb_105123_020--Hb_095399_010 Hb_003717_020--Hb_065395_020 Hb_003717_020--Hb_001021_050 Hb_003717_020--Hb_000045_060 Hb_111985_030 Hb_111985_030 Hb_003717_020--Hb_111985_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0341583 0 0.0129282 0 0.0450807
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.063687

CAGE analysis