Hb_007595_060

Information

Type -
Description -
Location Contig7595: 65060-65416
Sequence    

Annotation

kegg
ID rcu:RCOM_1170240
description hypothetical protein
nr
ID XP_002533012.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9T443
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_1170240 PE=4 SV=1
Gene Ontology
ID GO:0009536
description ycf2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_57212: 63251-64214
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007595_060 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002248_040 0.1936395543 - - conserved hypothetical protein [Ricinus communis]
3 Hb_105123_020 0.2738314282 - - conserved hypothetical protein [Ricinus communis]
4 Hb_001519_230 0.2766233887 - - PREDICTED: disease resistance protein At4g27190-like [Jatropha curcas]
5 Hb_126395_010 0.2785932112 - - hypothetical protein VITISV_043980 [Vitis vinifera]
6 Hb_095399_010 0.2970349249 - - cytochrome b/f complex subunit IV [Sphagnum fimbriatum]
7 Hb_000457_190 0.3119563952 - - -
8 Hb_097981_010 0.3325142767 - - -
9 Hb_007044_280 0.336639049 - - PREDICTED: uncharacterized protein LOC105123357 [Populus euphratica]
10 Hb_018591_040 0.3377483692 - - PREDICTED: protein VAC14 homolog [Jatropha curcas]
11 Hb_001141_300 0.3439035394 - - -
12 Hb_007659_010 0.3502410401 - - PREDICTED: pentatricopeptide repeat-containing protein At4g14820 [Jatropha curcas]
13 Hb_006995_020 0.3521790588 - - hypothetical protein glysoja_017339 [Glycine soja]
14 Hb_011310_090 0.3582331346 - - PREDICTED: putative ATPase N2B isoform X3 [Vitis vinifera]
15 Hb_001758_030 0.3606792174 - - hypothetical protein JCGZ_09181 [Jatropha curcas]
16 Hb_011649_020 0.3658878689 - - PREDICTED: uncharacterized protein LOC104212904 isoform X1 [Nicotiana sylvestris]
17 Hb_008206_090 0.3665152834 - - PREDICTED: uncharacterized protein LOC100811033 [Glycine max]
18 Hb_176819_010 0.3665522929 - - PREDICTED: uncharacterized protein LOC105631130 [Jatropha curcas]
19 Hb_060458_010 0.3716088178 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000053_050 0.3727407215 - - hypothetical protein F775_01878 [Aegilops tauschii]

Gene co-expression network

sample Hb_007595_060 Hb_007595_060 Hb_002248_040 Hb_002248_040 Hb_007595_060--Hb_002248_040 Hb_105123_020 Hb_105123_020 Hb_007595_060--Hb_105123_020 Hb_001519_230 Hb_001519_230 Hb_007595_060--Hb_001519_230 Hb_126395_010 Hb_126395_010 Hb_007595_060--Hb_126395_010 Hb_095399_010 Hb_095399_010 Hb_007595_060--Hb_095399_010 Hb_000457_190 Hb_000457_190 Hb_007595_060--Hb_000457_190 Hb_002248_040--Hb_126395_010 Hb_011649_020 Hb_011649_020 Hb_002248_040--Hb_011649_020 Hb_002248_040--Hb_000457_190 Hb_115031_030 Hb_115031_030 Hb_002248_040--Hb_115031_030 Hb_000331_050 Hb_000331_050 Hb_002248_040--Hb_000331_050 Hb_034359_010 Hb_034359_010 Hb_105123_020--Hb_034359_010 Hb_001758_030 Hb_001758_030 Hb_105123_020--Hb_001758_030 Hb_097981_010 Hb_097981_010 Hb_105123_020--Hb_097981_010 Hb_105123_020--Hb_001519_230 Hb_105123_020--Hb_095399_010 Hb_079978_010 Hb_079978_010 Hb_001519_230--Hb_079978_010 Hb_101151_030 Hb_101151_030 Hb_001519_230--Hb_101151_030 Hb_144552_010 Hb_144552_010 Hb_001519_230--Hb_144552_010 Hb_106873_010 Hb_106873_010 Hb_001519_230--Hb_106873_010 Hb_006995_020 Hb_006995_020 Hb_001519_230--Hb_006995_020 Hb_126395_010--Hb_115031_030 Hb_003388_070 Hb_003388_070 Hb_126395_010--Hb_003388_070 Hb_005656_130 Hb_005656_130 Hb_126395_010--Hb_005656_130 Hb_001706_030 Hb_001706_030 Hb_126395_010--Hb_001706_030 Hb_041476_010 Hb_041476_010 Hb_095399_010--Hb_041476_010 Hb_002224_050 Hb_002224_050 Hb_095399_010--Hb_002224_050 Hb_000541_010 Hb_000541_010 Hb_095399_010--Hb_000541_010 Hb_003245_010 Hb_003245_010 Hb_095399_010--Hb_003245_010 Hb_165958_010 Hb_165958_010 Hb_095399_010--Hb_165958_010 Hb_117252_010 Hb_117252_010 Hb_095399_010--Hb_117252_010 Hb_001141_300 Hb_001141_300 Hb_000457_190--Hb_001141_300 Hb_000049_130 Hb_000049_130 Hb_000457_190--Hb_000049_130 Hb_001814_060 Hb_001814_060 Hb_000457_190--Hb_001814_060 Hb_000094_030 Hb_000094_030 Hb_000457_190--Hb_000094_030 Hb_011310_090 Hb_011310_090 Hb_000457_190--Hb_011310_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.210305 0.39762 1.56578 0 5.43149
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 2.8325

CAGE analysis