Hb_003245_010

Information

Type -
Description -
Location Contig3245: 16501-21035
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa015000mg
description hypothetical protein
nr
ID XP_007200265.1
description hypothetical protein PRUPE_ppa015000mg [Prunus persica]
swissprot
ID O92815
description Gag-Pol polyprotein OS=Walleye dermal sarcoma virus GN=gag-pol PE=1 SV=2
trembl
ID M5VK25
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa015000mg PE=4 SV=1
Gene Ontology
ID GO:0003676
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003245_010 0.0 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
2 Hb_165958_010 0.0003315123 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_000541_010 0.0038323906 - - polyprotein [Citrus endogenous pararetrovirus]
4 Hb_117252_010 0.034858542 - - hypothetical protein [Pseudomonas tolaasii]
5 Hb_042795_010 0.0453088812 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
6 Hb_053575_010 0.0545415024 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
7 Hb_003401_040 0.0587023587 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
8 Hb_011114_050 0.0627871919 - - -
9 Hb_013874_010 0.065417458 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
10 Hb_017279_030 0.0687210096 - - -
11 Hb_041476_010 0.0756260905 - - PREDICTED: uncharacterized protein LOC105636643 [Jatropha curcas]
12 Hb_028105_020 0.0799032069 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
13 Hb_162933_010 0.0810870244 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
14 Hb_003463_040 0.0835183641 - - -
15 Hb_003694_070 0.0879773162 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
16 Hb_007111_020 0.0921165688 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
17 Hb_024128_010 0.0949153439 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
18 Hb_139518_020 0.0969758104 - - multidrug resistance pump, putative [Ricinus communis]
19 Hb_002417_040 0.0980311503 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
20 Hb_047623_010 0.0996068948 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]

Gene co-expression network

sample Hb_003245_010 Hb_003245_010 Hb_165958_010 Hb_165958_010 Hb_003245_010--Hb_165958_010 Hb_000541_010 Hb_000541_010 Hb_003245_010--Hb_000541_010 Hb_117252_010 Hb_117252_010 Hb_003245_010--Hb_117252_010 Hb_042795_010 Hb_042795_010 Hb_003245_010--Hb_042795_010 Hb_053575_010 Hb_053575_010 Hb_003245_010--Hb_053575_010 Hb_003401_040 Hb_003401_040 Hb_003245_010--Hb_003401_040 Hb_165958_010--Hb_000541_010 Hb_165958_010--Hb_117252_010 Hb_165958_010--Hb_042795_010 Hb_165958_010--Hb_053575_010 Hb_165958_010--Hb_003401_040 Hb_000541_010--Hb_117252_010 Hb_000541_010--Hb_042795_010 Hb_000541_010--Hb_053575_010 Hb_000541_010--Hb_003401_040 Hb_117252_010--Hb_042795_010 Hb_117252_010--Hb_053575_010 Hb_117252_010--Hb_003401_040 Hb_011114_050 Hb_011114_050 Hb_117252_010--Hb_011114_050 Hb_013874_010 Hb_013874_010 Hb_117252_010--Hb_013874_010 Hb_017279_030 Hb_017279_030 Hb_117252_010--Hb_017279_030 Hb_042795_010--Hb_053575_010 Hb_042795_010--Hb_003401_040 Hb_042795_010--Hb_011114_050 Hb_042795_010--Hb_013874_010 Hb_042795_010--Hb_017279_030 Hb_053575_010--Hb_003401_040 Hb_053575_010--Hb_011114_050 Hb_053575_010--Hb_013874_010 Hb_053575_010--Hb_017279_030 Hb_003401_040--Hb_011114_050 Hb_003401_040--Hb_013874_010 Hb_003401_040--Hb_017279_030 Hb_028105_020 Hb_028105_020 Hb_003401_040--Hb_028105_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0086417
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0189055

CAGE analysis