Hb_003401_040

Information

Type -
Description -
Location Contig3401: 19645-21967
Sequence    

Annotation

kegg
ID rcu:RCOM_0546890
description Benzoate carboxyl methyltransferase, putative (EC:2.1.1.141)
nr
ID XP_002531204.1
description Benzoate carboxyl methyltransferase, putative [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SYY5
description Benzoate carboxyl methyltransferase, putative OS=Ricinus communis GN=RCOM_0546890 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_003401_040 0.0 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
2 Hb_011114_050 0.0040928559 - - -
3 Hb_053575_010 0.0041678755 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_013874_010 0.0067288902 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
5 Hb_017279_030 0.0100403642 - - -
6 Hb_042795_010 0.0134120148 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
7 Hb_028105_020 0.0212551134 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
8 Hb_162933_010 0.0224429069 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
9 Hb_117252_010 0.0238688557 - - hypothetical protein [Pseudomonas tolaasii]
10 Hb_003463_040 0.0248827369 - - -
11 Hb_003694_070 0.0293584078 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
12 Hb_007111_020 0.033514531 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
13 Hb_024128_010 0.036325462 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
14 Hb_139518_020 0.0383952687 - - multidrug resistance pump, putative [Ricinus communis]
15 Hb_002417_040 0.0394555221 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
16 Hb_047623_010 0.0410387673 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
17 Hb_171554_060 0.0432030489 - - PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]
18 Hb_019299_040 0.0515353566 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
19 Hb_086455_010 0.0565941176 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
20 Hb_002628_030 0.0576889838 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_003401_040 Hb_003401_040 Hb_011114_050 Hb_011114_050 Hb_003401_040--Hb_011114_050 Hb_053575_010 Hb_053575_010 Hb_003401_040--Hb_053575_010 Hb_013874_010 Hb_013874_010 Hb_003401_040--Hb_013874_010 Hb_017279_030 Hb_017279_030 Hb_003401_040--Hb_017279_030 Hb_042795_010 Hb_042795_010 Hb_003401_040--Hb_042795_010 Hb_028105_020 Hb_028105_020 Hb_003401_040--Hb_028105_020 Hb_011114_050--Hb_013874_010 Hb_011114_050--Hb_017279_030 Hb_011114_050--Hb_053575_010 Hb_011114_050--Hb_028105_020 Hb_011114_050--Hb_042795_010 Hb_053575_010--Hb_042795_010 Hb_053575_010--Hb_013874_010 Hb_053575_010--Hb_017279_030 Hb_117252_010 Hb_117252_010 Hb_053575_010--Hb_117252_010 Hb_013874_010--Hb_017279_030 Hb_013874_010--Hb_028105_020 Hb_162933_010 Hb_162933_010 Hb_013874_010--Hb_162933_010 Hb_017279_030--Hb_028105_020 Hb_017279_030--Hb_162933_010 Hb_042795_010--Hb_117252_010 Hb_042795_010--Hb_013874_010 Hb_042795_010--Hb_017279_030 Hb_028105_020--Hb_162933_010 Hb_003463_040 Hb_003463_040 Hb_028105_020--Hb_003463_040 Hb_003694_070 Hb_003694_070 Hb_028105_020--Hb_003694_070 Hb_007111_020 Hb_007111_020 Hb_028105_020--Hb_007111_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0363502
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.108177

CAGE analysis