Hb_042795_010

Information

Type -
Description -
Location Contig42795: 1212-3189
Sequence    

Annotation

kegg
ID pper:PRUPE_ppa022673mg
description hypothetical protein
nr
ID XP_009787832.1
description PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
swissprot
ID -
description -
trembl
ID M5X787
description Uncharacterized protein OS=Prunus persica GN=PRUPE_ppa022673mg PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_042795_010 0.0 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
2 Hb_053575_010 0.0092444286 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
3 Hb_117252_010 0.0104586642 - - hypothetical protein [Pseudomonas tolaasii]
4 Hb_003401_040 0.0134120148 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
5 Hb_011114_050 0.0175043266 - - -
6 Hb_013874_010 0.0201398719 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
7 Hb_017279_030 0.0234505754 - - -
8 Hb_028105_020 0.0346613928 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
9 Hb_162933_010 0.0358486475 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
10 Hb_003463_040 0.0382872958 - - -
11 Hb_003694_070 0.0427605333 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
12 Hb_165958_010 0.0449776953 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_003245_010 0.0453088812 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
14 Hb_007111_020 0.0469140841 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
15 Hb_000541_010 0.049137171 - - polyprotein [Citrus endogenous pararetrovirus]
16 Hb_024128_010 0.0497231017 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
17 Hb_139518_020 0.0517914088 - - multidrug resistance pump, putative [Ricinus communis]
18 Hb_002417_040 0.052850864 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
19 Hb_047623_010 0.054432879 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
20 Hb_171554_060 0.0565954045 - - PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]

Gene co-expression network

sample Hb_042795_010 Hb_042795_010 Hb_053575_010 Hb_053575_010 Hb_042795_010--Hb_053575_010 Hb_117252_010 Hb_117252_010 Hb_042795_010--Hb_117252_010 Hb_003401_040 Hb_003401_040 Hb_042795_010--Hb_003401_040 Hb_011114_050 Hb_011114_050 Hb_042795_010--Hb_011114_050 Hb_013874_010 Hb_013874_010 Hb_042795_010--Hb_013874_010 Hb_017279_030 Hb_017279_030 Hb_042795_010--Hb_017279_030 Hb_053575_010--Hb_003401_040 Hb_053575_010--Hb_011114_050 Hb_053575_010--Hb_013874_010 Hb_053575_010--Hb_017279_030 Hb_053575_010--Hb_117252_010 Hb_117252_010--Hb_003401_040 Hb_117252_010--Hb_011114_050 Hb_117252_010--Hb_013874_010 Hb_117252_010--Hb_017279_030 Hb_003401_040--Hb_011114_050 Hb_003401_040--Hb_013874_010 Hb_003401_040--Hb_017279_030 Hb_028105_020 Hb_028105_020 Hb_003401_040--Hb_028105_020 Hb_011114_050--Hb_013874_010 Hb_011114_050--Hb_017279_030 Hb_011114_050--Hb_028105_020 Hb_013874_010--Hb_017279_030 Hb_013874_010--Hb_028105_020 Hb_162933_010 Hb_162933_010 Hb_013874_010--Hb_162933_010 Hb_017279_030--Hb_028105_020 Hb_017279_030--Hb_162933_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0298996
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.082786

CAGE analysis