Hb_017279_030

Information

Type -
Description -
Location Contig17279: 39806-41211
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_017279_030 0.0 - - -
2 Hb_013874_010 0.0033116056 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
3 Hb_011114_050 0.0059476515 - - -
4 Hb_003401_040 0.0100403642 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
5 Hb_028105_020 0.0112161877 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
6 Hb_162933_010 0.0124042254 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
7 Hb_053575_010 0.0142078955 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
8 Hb_003463_040 0.0148446136 - - -
9 Hb_003694_070 0.0193215082 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
10 Hb_042795_010 0.0234505754 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
11 Hb_007111_020 0.0234790032 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
12 Hb_024128_010 0.0262909928 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
13 Hb_139518_020 0.0283616473 - - multidrug resistance pump, putative [Ricinus communis]
14 Hb_002417_040 0.0294223578 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
15 Hb_047623_010 0.0310063141 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
16 Hb_171554_060 0.0331716241 - - PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]
17 Hb_117252_010 0.0339046482 - - hypothetical protein [Pseudomonas tolaasii]
18 Hb_019299_040 0.0415085082 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
19 Hb_086455_010 0.0465705373 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
20 Hb_002628_030 0.0476661605 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_017279_030 Hb_017279_030 Hb_013874_010 Hb_013874_010 Hb_017279_030--Hb_013874_010 Hb_011114_050 Hb_011114_050 Hb_017279_030--Hb_011114_050 Hb_003401_040 Hb_003401_040 Hb_017279_030--Hb_003401_040 Hb_028105_020 Hb_028105_020 Hb_017279_030--Hb_028105_020 Hb_162933_010 Hb_162933_010 Hb_017279_030--Hb_162933_010 Hb_053575_010 Hb_053575_010 Hb_017279_030--Hb_053575_010 Hb_013874_010--Hb_011114_050 Hb_013874_010--Hb_003401_040 Hb_013874_010--Hb_053575_010 Hb_013874_010--Hb_028105_020 Hb_013874_010--Hb_162933_010 Hb_011114_050--Hb_003401_040 Hb_011114_050--Hb_053575_010 Hb_011114_050--Hb_028105_020 Hb_042795_010 Hb_042795_010 Hb_011114_050--Hb_042795_010 Hb_003401_040--Hb_053575_010 Hb_003401_040--Hb_042795_010 Hb_003401_040--Hb_028105_020 Hb_028105_020--Hb_162933_010 Hb_003463_040 Hb_003463_040 Hb_028105_020--Hb_003463_040 Hb_003694_070 Hb_003694_070 Hb_028105_020--Hb_003694_070 Hb_007111_020 Hb_007111_020 Hb_028105_020--Hb_007111_020 Hb_162933_010--Hb_003463_040 Hb_162933_010--Hb_003694_070 Hb_162933_010--Hb_007111_020 Hb_024128_010 Hb_024128_010 Hb_162933_010--Hb_024128_010 Hb_053575_010--Hb_042795_010 Hb_117252_010 Hb_117252_010 Hb_053575_010--Hb_117252_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.134254
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.422071

CAGE analysis