Hb_024128_010

Information

Type -
Description -
Location Contig24128: 31200-32989
Sequence    

Annotation

kegg
ID tcc:TCM_009998
description DNA/RNA polymerases superfamily protein
nr
ID XP_012441885.1
description PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A061E5E3
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_009998 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_024128_010 0.0 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
2 Hb_139518_020 0.002071663 - - multidrug resistance pump, putative [Ricinus communis]
3 Hb_007111_020 0.0028131144 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
4 Hb_002417_040 0.0031329497 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
5 Hb_047623_010 0.0047178426 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
6 Hb_171554_060 0.0068845811 - - PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]
7 Hb_003694_070 0.0069717636 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
8 Hb_003463_040 0.0114492344 - - -
9 Hb_162933_010 0.0138896507 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
10 Hb_028105_020 0.01507763 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
11 Hb_019299_040 0.0152285959 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
12 Hb_086455_010 0.0202962497 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
13 Hb_002628_030 0.0213932222 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_016671_020 0.0231040934 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_014115_020 0.0234274376 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
16 Hb_099058_020 0.0243644437 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_003239_030 0.0256820643 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_017279_030 0.0262909928 - - -
19 Hb_008898_010 0.0263851744 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
20 Hb_115505_010 0.0273912822 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]

Gene co-expression network

sample Hb_024128_010 Hb_024128_010 Hb_139518_020 Hb_139518_020 Hb_024128_010--Hb_139518_020 Hb_007111_020 Hb_007111_020 Hb_024128_010--Hb_007111_020 Hb_002417_040 Hb_002417_040 Hb_024128_010--Hb_002417_040 Hb_047623_010 Hb_047623_010 Hb_024128_010--Hb_047623_010 Hb_171554_060 Hb_171554_060 Hb_024128_010--Hb_171554_060 Hb_003694_070 Hb_003694_070 Hb_024128_010--Hb_003694_070 Hb_139518_020--Hb_002417_040 Hb_139518_020--Hb_047623_010 Hb_139518_020--Hb_171554_060 Hb_139518_020--Hb_007111_020 Hb_139518_020--Hb_003694_070 Hb_007111_020--Hb_003694_070 Hb_007111_020--Hb_002417_040 Hb_007111_020--Hb_047623_010 Hb_003463_040 Hb_003463_040 Hb_007111_020--Hb_003463_040 Hb_002417_040--Hb_047623_010 Hb_002417_040--Hb_171554_060 Hb_002417_040--Hb_003694_070 Hb_047623_010--Hb_171554_060 Hb_019299_040 Hb_019299_040 Hb_047623_010--Hb_019299_040 Hb_171554_060--Hb_019299_040 Hb_171554_060--Hb_007111_020 Hb_003694_070--Hb_003463_040 Hb_162933_010 Hb_162933_010 Hb_003694_070--Hb_162933_010 Hb_028105_020 Hb_028105_020 Hb_003694_070--Hb_028105_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0161062
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0586877

CAGE analysis