Hb_139518_020

Information

Type -
Description -
Location Contig139518: 18539-19939
Sequence    

Annotation

kegg
ID rcu:RCOM_0377030
description multidrug resistance pump, putative
nr
ID XP_002532864.1
description multidrug resistance pump, putative [Ricinus communis]
swissprot
ID Q3V050
description Multidrug and toxin extrusion protein 2 OS=Mus musculus GN=Slc47a2 PE=1 SV=1
trembl
ID B9T3P5
description MATE efflux family protein OS=Ricinus communis GN=RCOM_0377030 PE=3 SV=1
Gene Ontology
ID GO:0005886
description mate efflux family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_139518_020 0.0 - - multidrug resistance pump, putative [Ricinus communis]
2 Hb_002417_040 0.0010612915 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
3 Hb_024128_010 0.002071663 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
4 Hb_047623_010 0.0026461974 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
5 Hb_171554_060 0.0048129654 - - PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]
6 Hb_007111_020 0.0048847581 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
7 Hb_003694_070 0.0090433386 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
8 Hb_019299_040 0.013157223 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
9 Hb_003463_040 0.013520683 - - -
10 Hb_162933_010 0.0159610078 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
11 Hb_028105_020 0.0171489369 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
12 Hb_086455_010 0.0182251268 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
13 Hb_002628_030 0.0193221638 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_016671_020 0.0210331432 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_014115_020 0.0213565089 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
16 Hb_099058_020 0.0222935791 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_003239_030 0.0236112946 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_008898_010 0.0243144576 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_115505_010 0.0253206439 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
20 Hb_005472_010 0.0260944699 - - -

Gene co-expression network

sample Hb_139518_020 Hb_139518_020 Hb_002417_040 Hb_002417_040 Hb_139518_020--Hb_002417_040 Hb_024128_010 Hb_024128_010 Hb_139518_020--Hb_024128_010 Hb_047623_010 Hb_047623_010 Hb_139518_020--Hb_047623_010 Hb_171554_060 Hb_171554_060 Hb_139518_020--Hb_171554_060 Hb_007111_020 Hb_007111_020 Hb_139518_020--Hb_007111_020 Hb_003694_070 Hb_003694_070 Hb_139518_020--Hb_003694_070 Hb_002417_040--Hb_047623_010 Hb_002417_040--Hb_024128_010 Hb_002417_040--Hb_171554_060 Hb_002417_040--Hb_007111_020 Hb_002417_040--Hb_003694_070 Hb_024128_010--Hb_007111_020 Hb_024128_010--Hb_047623_010 Hb_024128_010--Hb_171554_060 Hb_024128_010--Hb_003694_070 Hb_047623_010--Hb_171554_060 Hb_047623_010--Hb_007111_020 Hb_019299_040 Hb_019299_040 Hb_047623_010--Hb_019299_040 Hb_171554_060--Hb_019299_040 Hb_171554_060--Hb_007111_020 Hb_007111_020--Hb_003694_070 Hb_003463_040 Hb_003463_040 Hb_007111_020--Hb_003463_040 Hb_003694_070--Hb_003463_040 Hb_162933_010 Hb_162933_010 Hb_003694_070--Hb_162933_010 Hb_028105_020 Hb_028105_020 Hb_003694_070--Hb_028105_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0150399
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0554577

CAGE analysis