Hb_171554_060

Information

Type -
Description -
Location Contig171554: 55973-67336
Sequence    

Annotation

kegg
ID cit:102627687
description uncharacterized LOC102627687
nr
ID XP_006485550.1
description PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]
swissprot
ID -
description -
trembl
ID A5C0G0
description Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_016971 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_171554_060 0.0 - - PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]
2 Hb_047623_010 0.0021667872 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
3 Hb_002417_040 0.0037516873 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
4 Hb_139518_020 0.0048129654 - - multidrug resistance pump, putative [Ricinus communis]
5 Hb_024128_010 0.0068845811 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
6 Hb_019299_040 0.0083446311 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
7 Hb_007111_020 0.0096975672 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
8 Hb_086455_010 0.0134130001 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
9 Hb_003694_070 0.0138558932 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
10 Hb_002628_030 0.0145101622 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_016671_020 0.0162213541 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_014115_020 0.0165447623 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
13 Hb_099058_020 0.0174819602 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_003463_040 0.0183328417 - - -
15 Hb_003239_030 0.0187998663 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
16 Hb_008898_010 0.0195031362 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_115505_010 0.020509482 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
18 Hb_162933_010 0.0207728985 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
19 Hb_005472_010 0.0212834357 - - -
20 Hb_028105_020 0.021960684 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]

Gene co-expression network

sample Hb_171554_060 Hb_171554_060 Hb_047623_010 Hb_047623_010 Hb_171554_060--Hb_047623_010 Hb_002417_040 Hb_002417_040 Hb_171554_060--Hb_002417_040 Hb_139518_020 Hb_139518_020 Hb_171554_060--Hb_139518_020 Hb_024128_010 Hb_024128_010 Hb_171554_060--Hb_024128_010 Hb_019299_040 Hb_019299_040 Hb_171554_060--Hb_019299_040 Hb_007111_020 Hb_007111_020 Hb_171554_060--Hb_007111_020 Hb_047623_010--Hb_002417_040 Hb_047623_010--Hb_139518_020 Hb_047623_010--Hb_024128_010 Hb_047623_010--Hb_007111_020 Hb_047623_010--Hb_019299_040 Hb_002417_040--Hb_139518_020 Hb_002417_040--Hb_024128_010 Hb_002417_040--Hb_007111_020 Hb_003694_070 Hb_003694_070 Hb_002417_040--Hb_003694_070 Hb_139518_020--Hb_024128_010 Hb_139518_020--Hb_007111_020 Hb_139518_020--Hb_003694_070 Hb_024128_010--Hb_007111_020 Hb_024128_010--Hb_003694_070 Hb_086455_010 Hb_086455_010 Hb_019299_040--Hb_086455_010 Hb_002628_030 Hb_002628_030 Hb_019299_040--Hb_002628_030 Hb_016671_020 Hb_016671_020 Hb_019299_040--Hb_016671_020 Hb_014115_020 Hb_014115_020 Hb_019299_040--Hb_014115_020 Hb_099058_020 Hb_099058_020 Hb_019299_040--Hb_099058_020 Hb_007111_020--Hb_003694_070 Hb_003463_040 Hb_003463_040 Hb_007111_020--Hb_003463_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0125981
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0477623

CAGE analysis