Hb_099058_020

Information

Type -
Description -
Location Contig99058: 4445-9085
Sequence    

Annotation

kegg
ID tcc:TCM_003698
description DNA/RNA polymerases superfamily protein
nr
ID XP_007050046.1
description DNA/RNA polymerases superfamily protein [Theobroma cacao]
swissprot
ID P03556
description Enzymatic polyprotein OS=Cauliflower mosaic virus (strain D/H) GN=ORF V PE=3 SV=1
trembl
ID A0A061DW51
description DNA/RNA polymerases superfamily protein OS=Theobroma cacao GN=TCM_003698 PE=4 SV=1
Gene Ontology
ID GO:0005488
description dna rna polymerases superfamily protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_099058_020 0.0 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
2 Hb_014115_020 0.0009373999 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
3 Hb_016671_020 0.0012608723 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_003239_030 0.00131823 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
5 Hb_008898_010 0.002021692 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_002628_030 0.0029723576 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_115505_010 0.003028336 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
8 Hb_005472_010 0.003802538 - - -
9 Hb_086455_010 0.004069667 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
10 Hb_000204_170 0.0053723857 - - integrase [Gossypium herbaceum]
11 Hb_005986_020 0.0073332492 - - putative polyprotein [Oryza sativa Japonica Group]
12 Hb_019299_040 0.009138308 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
13 Hb_171554_060 0.0174819602 - - PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]
14 Hb_047623_010 0.0196482108 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
15 Hb_002417_040 0.021232646 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
16 Hb_139518_020 0.0222935791 - - multidrug resistance pump, putative [Ricinus communis]
17 Hb_024128_010 0.0243644437 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
18 Hb_007111_020 0.0271762474 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
19 Hb_003694_070 0.0313324882 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
20 Hb_003463_040 0.0358067506 - - -

Gene co-expression network

sample Hb_099058_020 Hb_099058_020 Hb_014115_020 Hb_014115_020 Hb_099058_020--Hb_014115_020 Hb_016671_020 Hb_016671_020 Hb_099058_020--Hb_016671_020 Hb_003239_030 Hb_003239_030 Hb_099058_020--Hb_003239_030 Hb_008898_010 Hb_008898_010 Hb_099058_020--Hb_008898_010 Hb_002628_030 Hb_002628_030 Hb_099058_020--Hb_002628_030 Hb_115505_010 Hb_115505_010 Hb_099058_020--Hb_115505_010 Hb_014115_020--Hb_016671_020 Hb_014115_020--Hb_002628_030 Hb_014115_020--Hb_003239_030 Hb_014115_020--Hb_008898_010 Hb_086455_010 Hb_086455_010 Hb_014115_020--Hb_086455_010 Hb_016671_020--Hb_002628_030 Hb_016671_020--Hb_003239_030 Hb_016671_020--Hb_086455_010 Hb_016671_020--Hb_008898_010 Hb_003239_030--Hb_008898_010 Hb_003239_030--Hb_115505_010 Hb_005472_010 Hb_005472_010 Hb_003239_030--Hb_005472_010 Hb_008898_010--Hb_115505_010 Hb_008898_010--Hb_005472_010 Hb_002628_030--Hb_086455_010 Hb_002628_030--Hb_003239_030 Hb_002628_030--Hb_008898_010 Hb_115505_010--Hb_005472_010 Hb_000204_170 Hb_000204_170 Hb_115505_010--Hb_000204_170 Hb_115505_010--Hb_014115_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.00412255
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0173228

CAGE analysis