Hb_000204_170

Information

Type -
Description -
Location Contig204: 266143-270549
Sequence    

Annotation

kegg
ID tcc:TCM_009998
description DNA/RNA polymerases superfamily protein
nr
ID AAP43916.1
description integrase [Gossypium herbaceum]
swissprot
ID -
description -
trembl
ID Q7XYU4
description Integrase (Fragment) OS=Gossypium herbaceum PE=4 SV=1
Gene Ontology
ID GO:0043231
description retrotransposon ty3-gypsy subclass

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000204_170 0.0 - - integrase [Gossypium herbaceum]
2 Hb_005472_010 0.0015698728 - - -
3 Hb_005986_020 0.0019609242 - - putative polyprotein [Oryza sativa Japonica Group]
4 Hb_115505_010 0.0023440795 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
5 Hb_008898_010 0.0033507221 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
6 Hb_003239_030 0.0040541781 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
7 Hb_099058_020 0.0053723857 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_014115_020 0.0063097609 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
9 Hb_016671_020 0.0066332232 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
10 Hb_002628_030 0.0083446404 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_086455_010 0.0094418935 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
12 Hb_019299_040 0.0145101493 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
13 Hb_171554_060 0.0228527297 - - PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]
14 Hb_047623_010 0.0250186153 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
15 Hb_002417_040 0.0266027615 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
16 Hb_139518_020 0.0276634908 - - multidrug resistance pump, putative [Ricinus communis]
17 Hb_024128_010 0.0297339337 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
18 Hb_007111_020 0.0325451152 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
19 Hb_003694_070 0.0367003332 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
20 Hb_003463_040 0.0411733596 - - -

Gene co-expression network

sample Hb_000204_170 Hb_000204_170 Hb_005472_010 Hb_005472_010 Hb_000204_170--Hb_005472_010 Hb_005986_020 Hb_005986_020 Hb_000204_170--Hb_005986_020 Hb_115505_010 Hb_115505_010 Hb_000204_170--Hb_115505_010 Hb_008898_010 Hb_008898_010 Hb_000204_170--Hb_008898_010 Hb_003239_030 Hb_003239_030 Hb_000204_170--Hb_003239_030 Hb_099058_020 Hb_099058_020 Hb_000204_170--Hb_099058_020 Hb_005472_010--Hb_115505_010 Hb_005472_010--Hb_008898_010 Hb_005472_010--Hb_003239_030 Hb_005472_010--Hb_005986_020 Hb_005472_010--Hb_099058_020 Hb_005986_020--Hb_115505_010 Hb_005986_020--Hb_008898_010 Hb_005986_020--Hb_003239_030 Hb_005986_020--Hb_099058_020 Hb_115505_010--Hb_008898_010 Hb_115505_010--Hb_003239_030 Hb_115505_010--Hb_099058_020 Hb_014115_020 Hb_014115_020 Hb_115505_010--Hb_014115_020 Hb_008898_010--Hb_003239_030 Hb_008898_010--Hb_099058_020 Hb_008898_010--Hb_014115_020 Hb_016671_020 Hb_016671_020 Hb_008898_010--Hb_016671_020 Hb_003239_030--Hb_099058_020 Hb_003239_030--Hb_014115_020 Hb_003239_030--Hb_016671_020 Hb_099058_020--Hb_014115_020 Hb_099058_020--Hb_016671_020 Hb_002628_030 Hb_002628_030 Hb_099058_020--Hb_002628_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.00703704
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.030539

CAGE analysis