Hb_014115_020

Information

Type -
Description -
Location Contig14115: 42521-51057
Sequence    

Annotation

kegg
ID tcc:TCM_013113
description Retrotransposon protein, putative
nr
ID XP_009599307.1
description PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
swissprot
ID Q9WJR5
description Endogenous retrovirus group K member 19 Pol protein OS=Homo sapiens GN=ERVK-19 PE=2 SV=2
trembl
ID A0A061FW58
description Retrotransposon protein, putative OS=Theobroma cacao GN=TCM_013113 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_014115_020 0.0 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
2 Hb_016671_020 0.0003234727 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
3 Hb_099058_020 0.0009373999 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_002628_030 0.0020349621 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_003239_030 0.0022556277 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
6 Hb_008898_010 0.0029590875 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
7 Hb_086455_010 0.0031322763 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
8 Hb_115505_010 0.0039657272 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
9 Hb_005472_010 0.0047399248 - - -
10 Hb_000204_170 0.0063097609 - - integrase [Gossypium herbaceum]
11 Hb_019299_040 0.0082009613 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
12 Hb_005986_020 0.0082706048 - - putative polyprotein [Oryza sativa Japonica Group]
13 Hb_171554_060 0.0165447623 - - PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]
14 Hb_047623_010 0.0187110666 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
15 Hb_002417_040 0.020295545 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
16 Hb_139518_020 0.0213565089 - - multidrug resistance pump, putative [Ricinus communis]
17 Hb_024128_010 0.0234274376 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
18 Hb_007111_020 0.0262393371 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
19 Hb_003694_070 0.0303957375 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
20 Hb_003463_040 0.0348701952 - - -

Gene co-expression network

sample Hb_014115_020 Hb_014115_020 Hb_016671_020 Hb_016671_020 Hb_014115_020--Hb_016671_020 Hb_099058_020 Hb_099058_020 Hb_014115_020--Hb_099058_020 Hb_002628_030 Hb_002628_030 Hb_014115_020--Hb_002628_030 Hb_003239_030 Hb_003239_030 Hb_014115_020--Hb_003239_030 Hb_008898_010 Hb_008898_010 Hb_014115_020--Hb_008898_010 Hb_086455_010 Hb_086455_010 Hb_014115_020--Hb_086455_010 Hb_016671_020--Hb_099058_020 Hb_016671_020--Hb_002628_030 Hb_016671_020--Hb_003239_030 Hb_016671_020--Hb_086455_010 Hb_016671_020--Hb_008898_010 Hb_099058_020--Hb_003239_030 Hb_099058_020--Hb_008898_010 Hb_099058_020--Hb_002628_030 Hb_115505_010 Hb_115505_010 Hb_099058_020--Hb_115505_010 Hb_002628_030--Hb_086455_010 Hb_002628_030--Hb_003239_030 Hb_002628_030--Hb_008898_010 Hb_003239_030--Hb_008898_010 Hb_003239_030--Hb_115505_010 Hb_005472_010 Hb_005472_010 Hb_003239_030--Hb_005472_010 Hb_008898_010--Hb_115505_010 Hb_008898_010--Hb_005472_010 Hb_086455_010--Hb_099058_020 Hb_019299_040 Hb_019299_040 Hb_086455_010--Hb_019299_040 Hb_086455_010--Hb_003239_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.00456165
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0190609

CAGE analysis