Hb_019299_040

Information

Type transcription factor
Description TF Family: B3
Location Contig19299: 42108-44871
Sequence    

Annotation

kegg
ID pop:POPTR_0002s25330g
description POPTRDRAFT_408900; ABA insensitive 3 family protein
nr
ID XP_012085841.1
description PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
swissprot
ID Q01593
description B3 domain-containing transcription factor ABI3 OS=Arabidopsis thaliana GN=ABI3 PE=1 SV=1
trembl
ID A0A067K3N4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_17582 PE=4 SV=1
Gene Ontology
ID GO:0003677
description b3 domain-containing transcription factor abi3

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_019299_040 0.0 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
2 Hb_086455_010 0.0050687827 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
3 Hb_002628_030 0.0061660765 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
4 Hb_016671_020 0.0078775043 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
5 Hb_014115_020 0.0082009613 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
6 Hb_171554_060 0.0083446311 - - PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]
7 Hb_099058_020 0.009138308 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
8 Hb_003239_030 0.0104564425 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
9 Hb_047623_010 0.0105112833 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
10 Hb_008898_010 0.0111598434 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
11 Hb_002417_040 0.0120960502 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
12 Hb_115505_010 0.0121663878 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
13 Hb_005472_010 0.0129405034 - - -
14 Hb_139518_020 0.013157223 - - multidrug resistance pump, putative [Ricinus communis]
15 Hb_000204_170 0.0145101493 - - integrase [Gossypium herbaceum]
16 Hb_024128_010 0.0152285959 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
17 Hb_005986_020 0.0164707107 - - putative polyprotein [Oryza sativa Japonica Group]
18 Hb_007111_020 0.0180411747 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
19 Hb_003694_070 0.0221987374 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
20 Hb_003463_040 0.026674653 - - -

Gene co-expression network

sample Hb_019299_040 Hb_019299_040 Hb_086455_010 Hb_086455_010 Hb_019299_040--Hb_086455_010 Hb_002628_030 Hb_002628_030 Hb_019299_040--Hb_002628_030 Hb_016671_020 Hb_016671_020 Hb_019299_040--Hb_016671_020 Hb_014115_020 Hb_014115_020 Hb_019299_040--Hb_014115_020 Hb_171554_060 Hb_171554_060 Hb_019299_040--Hb_171554_060 Hb_099058_020 Hb_099058_020 Hb_019299_040--Hb_099058_020 Hb_086455_010--Hb_002628_030 Hb_086455_010--Hb_016671_020 Hb_086455_010--Hb_014115_020 Hb_086455_010--Hb_099058_020 Hb_003239_030 Hb_003239_030 Hb_086455_010--Hb_003239_030 Hb_002628_030--Hb_016671_020 Hb_002628_030--Hb_014115_020 Hb_002628_030--Hb_099058_020 Hb_002628_030--Hb_003239_030 Hb_008898_010 Hb_008898_010 Hb_002628_030--Hb_008898_010 Hb_016671_020--Hb_014115_020 Hb_016671_020--Hb_099058_020 Hb_016671_020--Hb_003239_030 Hb_016671_020--Hb_008898_010 Hb_014115_020--Hb_099058_020 Hb_014115_020--Hb_003239_030 Hb_014115_020--Hb_008898_010 Hb_047623_010 Hb_047623_010 Hb_171554_060--Hb_047623_010 Hb_002417_040 Hb_002417_040 Hb_171554_060--Hb_002417_040 Hb_139518_020 Hb_139518_020 Hb_171554_060--Hb_139518_020 Hb_024128_010 Hb_024128_010 Hb_171554_060--Hb_024128_010 Hb_007111_020 Hb_007111_020 Hb_171554_060--Hb_007111_020 Hb_099058_020--Hb_003239_030 Hb_099058_020--Hb_008898_010 Hb_115505_010 Hb_115505_010 Hb_099058_020--Hb_115505_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.00847646
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.03374

CAGE analysis