Hb_047623_010

Information

Type -
Description -
Location Contig47623: 35-490
Sequence    

Annotation

kegg
ID pxb:103944599
description DNA-binding protein HEXBP-like
nr
ID XP_012461546.1
description PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A067LNH1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13470 PE=4 SV=1
Gene Ontology
ID GO:0003676
description PREDICTED: uncharacterized protein LOC105781565

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_047623_010 0.0 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
2 Hb_002417_040 0.001584909 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
3 Hb_171554_060 0.0021667872 - - PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]
4 Hb_139518_020 0.0026461974 - - multidrug resistance pump, putative [Ricinus communis]
5 Hb_024128_010 0.0047178426 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
6 Hb_007111_020 0.007530889 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
7 Hb_019299_040 0.0105112833 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
8 Hb_003694_070 0.0116893461 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
9 Hb_086455_010 0.0155794631 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
10 Hb_003463_040 0.0161664906 - - -
11 Hb_002628_030 0.0166765732 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
12 Hb_016671_020 0.0183876763 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
13 Hb_162933_010 0.0186066778 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
14 Hb_014115_020 0.0187110666 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
15 Hb_099058_020 0.0196482108 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_028105_020 0.0197945326 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
17 Hb_003239_030 0.0209660363 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_008898_010 0.0216692608 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_115505_010 0.0226755388 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
20 Hb_005472_010 0.0234494381 - - -

Gene co-expression network

sample Hb_047623_010 Hb_047623_010 Hb_002417_040 Hb_002417_040 Hb_047623_010--Hb_002417_040 Hb_171554_060 Hb_171554_060 Hb_047623_010--Hb_171554_060 Hb_139518_020 Hb_139518_020 Hb_047623_010--Hb_139518_020 Hb_024128_010 Hb_024128_010 Hb_047623_010--Hb_024128_010 Hb_007111_020 Hb_007111_020 Hb_047623_010--Hb_007111_020 Hb_019299_040 Hb_019299_040 Hb_047623_010--Hb_019299_040 Hb_002417_040--Hb_139518_020 Hb_002417_040--Hb_024128_010 Hb_002417_040--Hb_171554_060 Hb_002417_040--Hb_007111_020 Hb_003694_070 Hb_003694_070 Hb_002417_040--Hb_003694_070 Hb_171554_060--Hb_139518_020 Hb_171554_060--Hb_024128_010 Hb_171554_060--Hb_019299_040 Hb_171554_060--Hb_007111_020 Hb_139518_020--Hb_024128_010 Hb_139518_020--Hb_007111_020 Hb_139518_020--Hb_003694_070 Hb_024128_010--Hb_007111_020 Hb_024128_010--Hb_003694_070 Hb_007111_020--Hb_003694_070 Hb_003463_040 Hb_003463_040 Hb_007111_020--Hb_003463_040 Hb_086455_010 Hb_086455_010 Hb_019299_040--Hb_086455_010 Hb_002628_030 Hb_002628_030 Hb_019299_040--Hb_002628_030 Hb_016671_020 Hb_016671_020 Hb_019299_040--Hb_016671_020 Hb_014115_020 Hb_014115_020 Hb_019299_040--Hb_014115_020 Hb_099058_020 Hb_099058_020 Hb_019299_040--Hb_099058_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0601515
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.225208

CAGE analysis