Hb_002417_040

Information

Type desease resistance
Description Gene Name: NB-ARC
Location Contig2417: 38328-40377
Sequence    

Annotation

kegg
ID pop:POPTR_0137s00200g
description hypothetical protein
nr
ID XP_012069289.1
description PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L127
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_24942 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_002417_040 0.0 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
2 Hb_139518_020 0.0010612915 - - multidrug resistance pump, putative [Ricinus communis]
3 Hb_047623_010 0.001584909 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
4 Hb_024128_010 0.0031329497 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
5 Hb_171554_060 0.0037516873 - - PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]
6 Hb_007111_020 0.0059460286 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
7 Hb_003694_070 0.0101045644 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
8 Hb_019299_040 0.0120960502 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
9 Hb_003463_040 0.0145818338 - - -
10 Hb_162933_010 0.0170221063 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
11 Hb_086455_010 0.0171640705 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
12 Hb_028105_020 0.0182100069 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
13 Hb_002628_030 0.0182611381 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
14 Hb_016671_020 0.0199721691 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_014115_020 0.020295545 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
16 Hb_099058_020 0.021232646 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
17 Hb_003239_030 0.0225504071 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
18 Hb_008898_010 0.0232535956 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_115505_010 0.0242598198 - - PREDICTED: uncharacterized protein LOC104216022, partial [Nicotiana sylvestris]
20 Hb_005472_010 0.0250336761 - - -

Gene co-expression network

sample Hb_002417_040 Hb_002417_040 Hb_139518_020 Hb_139518_020 Hb_002417_040--Hb_139518_020 Hb_047623_010 Hb_047623_010 Hb_002417_040--Hb_047623_010 Hb_024128_010 Hb_024128_010 Hb_002417_040--Hb_024128_010 Hb_171554_060 Hb_171554_060 Hb_002417_040--Hb_171554_060 Hb_007111_020 Hb_007111_020 Hb_002417_040--Hb_007111_020 Hb_003694_070 Hb_003694_070 Hb_002417_040--Hb_003694_070 Hb_139518_020--Hb_024128_010 Hb_139518_020--Hb_047623_010 Hb_139518_020--Hb_171554_060 Hb_139518_020--Hb_007111_020 Hb_139518_020--Hb_003694_070 Hb_047623_010--Hb_171554_060 Hb_047623_010--Hb_024128_010 Hb_047623_010--Hb_007111_020 Hb_019299_040 Hb_019299_040 Hb_047623_010--Hb_019299_040 Hb_024128_010--Hb_007111_020 Hb_024128_010--Hb_171554_060 Hb_024128_010--Hb_003694_070 Hb_171554_060--Hb_019299_040 Hb_171554_060--Hb_007111_020 Hb_007111_020--Hb_003694_070 Hb_003463_040 Hb_003463_040 Hb_007111_020--Hb_003463_040 Hb_003694_070--Hb_003463_040 Hb_162933_010 Hb_162933_010 Hb_003694_070--Hb_162933_010 Hb_028105_020 Hb_028105_020 Hb_003694_070--Hb_028105_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0144974
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0537847

CAGE analysis