Hb_007111_020

Information

Type -
Description -
Location Contig7111: 27094-28989
Sequence    

Annotation

kegg
ID vvi:104877741
description uncharacterized LOC104877741
nr
ID XP_012477608.1
description PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
swissprot
ID -
description -
trembl
ID A0A067KEX3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13738 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_007111_020 0.0 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
2 Hb_024128_010 0.0028131144 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
3 Hb_003694_070 0.0041587037 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
4 Hb_139518_020 0.0048847581 - - multidrug resistance pump, putative [Ricinus communis]
5 Hb_002417_040 0.0059460286 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
6 Hb_047623_010 0.007530889 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
7 Hb_003463_040 0.0086363045 - - -
8 Hb_171554_060 0.0096975672 - - PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]
9 Hb_162933_010 0.0110768223 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
10 Hb_028105_020 0.0122648586 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
11 Hb_019299_040 0.0180411747 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor ABI3 [Jatropha curcas]
12 Hb_086455_010 0.023108442 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
13 Hb_017279_030 0.0234790032 - - -
14 Hb_002628_030 0.0242053167 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
15 Hb_016671_020 0.0259160251 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
16 Hb_014115_020 0.0262393371 - - PREDICTED: uncharacterized protein LOC104094989 [Nicotiana tomentosiformis]
17 Hb_013874_010 0.0267893205 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
18 Hb_099058_020 0.0271762474 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
19 Hb_003239_030 0.028493727 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
20 Hb_008898_010 0.0291967586 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]

Gene co-expression network

sample Hb_007111_020 Hb_007111_020 Hb_024128_010 Hb_024128_010 Hb_007111_020--Hb_024128_010 Hb_003694_070 Hb_003694_070 Hb_007111_020--Hb_003694_070 Hb_139518_020 Hb_139518_020 Hb_007111_020--Hb_139518_020 Hb_002417_040 Hb_002417_040 Hb_007111_020--Hb_002417_040 Hb_047623_010 Hb_047623_010 Hb_007111_020--Hb_047623_010 Hb_003463_040 Hb_003463_040 Hb_007111_020--Hb_003463_040 Hb_024128_010--Hb_139518_020 Hb_024128_010--Hb_002417_040 Hb_024128_010--Hb_047623_010 Hb_171554_060 Hb_171554_060 Hb_024128_010--Hb_171554_060 Hb_024128_010--Hb_003694_070 Hb_003694_070--Hb_003463_040 Hb_162933_010 Hb_162933_010 Hb_003694_070--Hb_162933_010 Hb_028105_020 Hb_028105_020 Hb_003694_070--Hb_028105_020 Hb_003694_070--Hb_139518_020 Hb_139518_020--Hb_002417_040 Hb_139518_020--Hb_047623_010 Hb_139518_020--Hb_171554_060 Hb_002417_040--Hb_047623_010 Hb_002417_040--Hb_171554_060 Hb_002417_040--Hb_003694_070 Hb_047623_010--Hb_171554_060 Hb_019299_040 Hb_019299_040 Hb_047623_010--Hb_019299_040 Hb_003463_040--Hb_162933_010 Hb_003463_040--Hb_028105_020 Hb_003463_040--Hb_024128_010 Hb_003463_040--Hb_139518_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0175684
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.0629946

CAGE analysis