Hb_117252_010

Information

Type -
Description -
Location Contig117252: 18-680
Sequence    

Annotation

kegg
ID mtr:MTR_6g046770
description hypothetical protein
nr
ID WP_016971917.1
description hypothetical protein [Pseudomonas tolaasii]
swissprot
ID -
description -
trembl
ID Q7XYF1
description Protease (Fragment) OS=Gossypium hirsutum PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_117252_010 0.0 - - hypothetical protein [Pseudomonas tolaasii]
2 Hb_042795_010 0.0104586642 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC104235718, partial [Nicotiana sylvestris]
3 Hb_053575_010 0.0197020613 - - MULTISPECIES: hypothetical protein, partial [Pseudomonas fluorescens group]
4 Hb_003401_040 0.0238688557 - - Benzoate carboxyl methyltransferase, putative [Ricinus communis]
5 Hb_011114_050 0.0279601876 - - -
6 Hb_013874_010 0.030594994 - - PREDICTED: uncharacterized protein LOC104647507 [Solanum lycopersicum]
7 Hb_017279_030 0.0339046482 - - -
8 Hb_165958_010 0.03452722 - - DNA/RNA polymerases superfamily protein [Theobroma cacao]
9 Hb_003245_010 0.034858542 - - hypothetical protein PRUPE_ppa015000mg [Prunus persica]
10 Hb_000541_010 0.0386884788 - - polyprotein [Citrus endogenous pararetrovirus]
11 Hb_028105_020 0.0451108848 - - PREDICTED: uncharacterized protein LOC104234330 [Nicotiana sylvestris]
12 Hb_162933_010 0.0462975595 - - PREDICTED: uncharacterized protein LOC104227769, partial [Nicotiana sylvestris]
13 Hb_003463_040 0.0487349583 - - -
14 Hb_003694_070 0.053205698 - - PREDICTED: uncharacterized protein LOC105786773 [Gossypium raimondii]
15 Hb_007111_020 0.0573566872 - - PREDICTED: uncharacterized protein LOC105793230 [Gossypium raimondii]
16 Hb_024128_010 0.0601638382 - - PREDICTED: uncharacterized protein LOC105766879 [Gossypium raimondii]
17 Hb_139518_020 0.0622307007 - - multidrug resistance pump, putative [Ricinus communis]
18 Hb_002417_040 0.0632893927 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance protein RPM1-like [Jatropha curcas]
19 Hb_047623_010 0.0648702385 - - PREDICTED: uncharacterized protein LOC105781565 [Gossypium raimondii]
20 Hb_171554_060 0.0670311083 - - PREDICTED: uncharacterized protein LOC102627687 [Citrus sinensis]

Gene co-expression network

sample Hb_117252_010 Hb_117252_010 Hb_042795_010 Hb_042795_010 Hb_117252_010--Hb_042795_010 Hb_053575_010 Hb_053575_010 Hb_117252_010--Hb_053575_010 Hb_003401_040 Hb_003401_040 Hb_117252_010--Hb_003401_040 Hb_011114_050 Hb_011114_050 Hb_117252_010--Hb_011114_050 Hb_013874_010 Hb_013874_010 Hb_117252_010--Hb_013874_010 Hb_017279_030 Hb_017279_030 Hb_117252_010--Hb_017279_030 Hb_042795_010--Hb_053575_010 Hb_042795_010--Hb_003401_040 Hb_042795_010--Hb_011114_050 Hb_042795_010--Hb_013874_010 Hb_042795_010--Hb_017279_030 Hb_053575_010--Hb_003401_040 Hb_053575_010--Hb_011114_050 Hb_053575_010--Hb_013874_010 Hb_053575_010--Hb_017279_030 Hb_003401_040--Hb_011114_050 Hb_003401_040--Hb_013874_010 Hb_003401_040--Hb_017279_030 Hb_028105_020 Hb_028105_020 Hb_003401_040--Hb_028105_020 Hb_011114_050--Hb_013874_010 Hb_011114_050--Hb_017279_030 Hb_011114_050--Hb_028105_020 Hb_013874_010--Hb_017279_030 Hb_013874_010--Hb_028105_020 Hb_162933_010 Hb_162933_010 Hb_013874_010--Hb_162933_010 Hb_017279_030--Hb_028105_020 Hb_017279_030--Hb_162933_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0 0 0 0 0.0514661
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0 0.134816

CAGE analysis